PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G082586_P01
Common NameLOC100280340
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 332aa    MW: 34935.4 Da    PI: 6.2594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G082586_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13118169155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r+ h ++Er+RR+++N+ ++ Lr+l+P+a   + ++ + a+i+  A++++k+L+
  GRMZM2G082586_P01 118 QRMVHIAVERNRRKQMNEYLAALRSLMPPA---YTQRGDQASIVGGAINFVKELE 169
                        7999**************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.04E-14116173No hitNo description
PROSITE profilePS5088815.396117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-17117187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-13119183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALEAVVLSQ QGSRFGCGAM AAGGPWSGLF FSGMEGVVEI GSGAGGGRDV AGCSPPQLLQ  60
EPAARALPVA SSVGSASGGA GQDAPAALAV TATAAAGTGR RKRRRMRPLK NEEEVESQRM  120
VHIAVERNRR KQMNEYLAAL RSLMPPAYTQ RGDQASIVGG AINFVKELEQ LLQSLEAQQR  180
RSSRRQGPAC AVDPDDAGPF ADFFTFPQYS MCAAAAAPSE NPGADADAEQ EASGSKPSGV  240
ADVEATMVES HANLRVLSRR RPRQLLRLVL GLQGHRLTVL HLNMSSAGHM VLYSFSLKVE  300
DDCPLTSVDE IAGAAHQIVE KINEEQGGGS LE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100104RKRRR
2118129RMVHIAVERNRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G082586
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G082586_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560410.0BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds.
GenBankEU9519700.0EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146738.10.0uncharacterized protein LOC100280340
TrEMBLA0A1D6I6900.0A0A1D6I690_MAIZE; DNA binding protein
STRINGGRMZM2G082586_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-41bHLH family protein