PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G082387_P01
Common NameLOC100281386
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 447aa    MW: 48471 Da    PI: 6.8274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G082387_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.61.1e-124524421374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPil 91 
                        l++lLl+cA a  +g l +a+a+L+++  laspdgd+mqR+aa f+eALa+r +r +++l++al  p++ +  + +e +aa++ f +++P+l
  GRMZM2G082387_P01  52 LIHLLLNCAAAAGAGRLDAANAALEHIASLASPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRAGP--TPAELAAARRHFLDLCPFL 141
                        689************************************************************95444444..68999999*********** PP

               GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                        +++  +aNq +lea+e+e++vH++D++    +QW+ Ll+ La+Rpegpp+lR+T+v++    +++ l +t+  L+k Ae+l+vpf+fn+ v+
  GRMZM2G082387_P01 142 RLAGAAANQSVLEAMESERMVHVVDLGGADAAQWVELLHLLAARPEGPPHLRLTAVHE----HRDVLTQTAVALTKEAERLDVPFQFNP-VV 228
                        **********************************************************....9**************************.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnse 251
                        +rle+l++e+Lrvk+gEalaV ++lqlh ll                            +++s+ d++L ++++lsPkvvvv+eqea+hn++
  GRMZM2G082387_P01 229 SRLEALDVESLRVKTGEALAVTSSLQLHCLLasdddsgkhhqgsgdhkrqrspesG-VSPSTSRADAFLGALWGLSPKVVVVTEQEASHNAA 319
                        **************************************************997532.223334799************************** PP

               GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                        ++ erf+eal+yy+alfd+le+ +pr s er+ vEr llg+e++n+vac ga+rrerhe+l +W +r+e aGF  vpls++a  qa++  + 
  GRMZM2G082387_P01 320 PLTERFVEALNYYAALFDCLESAAPRGSVERARVERWLLGEEVKNIVACDGADRRERHERLDRWAARMEGAGFARVPLSYYALLQARRAAQG 411
                        ******************************************************************************************** PP

               GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         + dg++v ee+g+++l+W++r+++svSaWr
  GRMZM2G082387_P01 412 LGCDGFKVREEKGAFFLCWQERAIFSVSAWR 442
                        ******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.98226422IPR005202Transcription factor GRAS
PfamPF035144.0E-12252442IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVQDEGSSSS VTSSPLHNFS TMPLHASPGG APAPTPPWLV RELRSDERGL CLIHLLLNCA  60
AAAGAGRLDA ANAALEHIAS LASPDGDAMQ RVAAAFAEAL ARRALRAWPG LCRALLLPRA  120
GPTPAELAAA RRHFLDLCPF LRLAGAAANQ SVLEAMESER MVHVVDLGGA DAAQWVELLH  180
LLAARPEGPP HLRLTAVHEH RDVLTQTAVA LTKEAERLDV PFQFNPVVSR LEALDVESLR  240
VKTGEALAVT SSLQLHCLLA SDDDSGKHHQ GSGDHKRQRS PESGVSPSTS RADAFLGALW  300
GLSPKVVVVT EQEASHNAAP LTERFVEALN YYAALFDCLE SAAPRGSVER ARVERWLLGE  360
EVKNIVACDG ADRRERHERL DRWAARMEGA GFARVPLSYY ALLQARRAAQ GLGCDGFKVR  420
EEKGAFFLCW QERAIFSVSA WRGRRFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-61404447381Protein SCARECROW
5b3h_A3e-61404446380Protein SCARECROW
5b3h_D3e-61404446380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.336360.0endosperm| leaf| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G082387
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G082387_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565700.0EU956570.1 Zea mays clone 1566913 GRAS family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147776.10.0GRAS family transcription factor containing protein
SwissprotQ9LPR81e-168SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3L6F9Y10.0A0A3L6F9Y1_MAIZE; Scarecrow-like protein 3
TrEMBLB6SV050.0B6SV05_MAIZE; GRAS family transcription factor containing protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-135scarecrow-like 3
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]