PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G082318_P01 | ||||||||
Common Name | GBP12, si687048c12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GeBP | ||||||||
Protein Properties | Length: 374aa MW: 40560.6 Da PI: 5.7871 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 110.1 | 1.5e-34 | 79 | 178 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye ++++++++++ksqlveK+rrLK+K++++v++ ++sg ++f+++h+q if GRMZM2G082318_P01 79 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFTKSQLVEKLRRLKRKYRNCVSRlRESGATFTFRSPHEQAIF 170 79************************99877778***************************************8999*************** PP DUF573 90 elskkiWg 97 e+++ iW+ GRMZM2G082318_P01 171 EIARNIWR 178 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.9E-31 | 80 | 177 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MPPTGDDPPA SAGISFPDAD GGGDSEDGDF AGAHLLDPTD PGLPNPTTSS ATGLPHAIPA 60 AGSGGGPVTS GNGGERRPLF QRLWTEEDEI VILRGFAEFT AARGTAFASH QYDTDPFYED 120 MRRRLQLDFT KSQLVEKLRR LKRKYRNCVS RLRESGATFT FRSPHEQAIF EIARNIWRPT 180 NKHGRDPSAD SDDEDAAAAT QIPANTSPNG EAKSPSSTRQ RRRRRVMEFS PATGAAPATN 240 MLQPPQPVQL SVSVPVKMDD SLPAQPQTPM PVMVAMDGSE PLRLPVVSPQ SGVSDAEKTC 300 LTPLFKEMLR AAINVGANPF GAKLPEPPLG LAMEGEKWRK QRILELEVYL KRIELLQDQA 360 KATLEELKSS TPGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.96316 | 0.0 | embryo| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G082318 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G082318_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041652 | 0.0 | BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds. | |||
GenBank | EU969972 | 0.0 | EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141580.1 | 0.0 | uncharacterized protein LOC100273696 | ||||
TrEMBL | A0A3L6E722 | 0.0 | A0A3L6E722_MAIZE; Putative transcription factor | ||||
TrEMBL | B4FX14 | 0.0 | B4FX14_MAIZE; GeBP transcription factor | ||||
TrEMBL | K0DF30 | 0.0 | K0DF30_MAIZE; GBP12 GeBP type transcription factor (Fragment) | ||||
STRING | GRMZM2G082318_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 | Representative plant | OGRP3184 | 10 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 7e-48 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G082318_P01 |
Entrez Gene | 100273696 |
Publications ? help Back to Top | |||
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