PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G082227_P01
Common NameABI8, LOC103631056, Zm.31375
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 327aa    MW: 36033.4 Da    PI: 10.0197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G082227_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.48.9e-3138142199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                        f+kv tpsdv+k++rlv+pk++ae++         + ++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  
  GRMZM2G082227_P01  38 FDKVVTPSDVGKLNRLVIPKQHAERYfpldaaA--NDKGLLLSFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGv 127
                        89*************************999643..346779************************************************665 PP

                        SS.SEE..EEEEE-S CS
                 B3  86 gr.sefelvvkvfrk 99 
                        g+  +++l++ ++r+
  GRMZM2G082227_P01 128 GEaARGRLFIDWRRR 142
                        8889999**999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-4128144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-2835140IPR015300DNA-binding pseudobarrel domain
CDDcd100177.81E-2636123No hitNo description
PfamPF023625.7E-2838142IPR003340B3 DNA binding domain
SMARTSM010192.4E-2138143IPR003340B3 DNA binding domain
PROSITE profilePS5086314.2438143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEFTAPPPAT RSGGGEERAA AEHHQQQQQA TVEKEHMFDK VVTPSDVGKL NRLVIPKQHA  60
ERYFPLDAAA NDKGLLLSFE DRAGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKRLDAGDT  120
VSFGRGVGEA ARGRLFIDWR RRPDPPVVHH QYHHHRLPLP SAVVPYAPWA AAAHAHHHHY  180
PAAGVGAART TTTTTTTVLH HLPPSPSPLY LDTRRRHVGY DAYGAGTRQL LFYRPHQQPS  240
TTVMLDSVPV RLPPTPGQHA EPPPPAVASS ASKRVRLFGV NLDCAAAAGS EEENVGGWRT  300
SAPPTQQASS SSSYSSGKAR CSLNLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-63331433114B3 domain-containing transcription factor NGA1
5os9_B2e-63331433114B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G082227
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G082227_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270010.0KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650288.10.0B3 domain-containing protein Os03g0120900
SwissprotQ8LMR91e-114Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A060CZ680.0A0A060CZ68_MAIZE; ABI3VP1 transcription factor (Fragment)
TrEMBLA0A317Y3I00.0A0A317Y3I0_MAIZE; B3 domain-containing protein
STRINGGRMZM2G082227_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-60B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]