PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G081919_P06 | ||||||||
Common Name | pco131231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 563aa MW: 61659.3 Da PI: 8.1692 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2.1e-15 | 65 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT Ede l +av+ + g++Wk+Ia+ ++ Rt+ qc +rwqk+l GRMZM2G081919_P06 65 KGGWTLKEDETLRKAVEAFKGRNWKKIAEFFQ-DRTEVQCLHRWQKVL 111 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 63 | 6.1e-20 | 117 | 163 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++d+v+++G+ W+ Ia+ ++ gR +kqc++rw+++l GRMZM2G081919_P06 117 KGPWTQEEDEKIIDLVRKYGPTKWSIIAKSLP-GRIGKQCRERWHNHL 163 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 58 | 2.2e-18 | 169 | 212 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE+ l+da++ +G++ W+ Ia+ ++ gRt++++k++w++ GRMZM2G081919_P06 169 KDAWTPEEERALIDAHQVFGNK-WAEIAKVLP-GRTDNSIKNHWNS 212 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.065 | 60 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-13 | 64 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 65 | 111 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.9E-15 | 66 | 121 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-21 | 67 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.13E-12 | 68 | 111 | No hit | No description |
PROSITE profile | PS51294 | 33.01 | 112 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.54E-33 | 114 | 210 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-19 | 116 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-18 | 117 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.76E-17 | 119 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-27 | 124 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-18 | 168 | 216 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.454 | 168 | 218 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-16 | 169 | 212 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-25 | 171 | 218 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.25E-14 | 171 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MRAMAEVMQE GCVENRQPLA ASSSSVSDGS SCGGGERAGT SPPVSSSGNC ISVLRRTSGP 60 IRRTKGGWTL KEDETLRKAV EAFKGRNWKK IAEFFQDRTE VQCLHRWQKV LNPELIKGPW 120 TQEEDEKIID LVRKYGPTKW SIIAKSLPGR IGKQCRERWH NHLNPEIRKD AWTPEEERAL 180 IDAHQVFGNK WAEIAKVLPG RTDNSIKNHW NSSLKKKLEA YSNSSVLSVS KLFVHDDFKD 240 KMKPVATDGH LDLNQMPSIG SKDSSGRAYH SIVSPLSQAY NLDSSCLSLS IPTMQPLTSH 300 EMSSLIDGSA VTLVVQCLES DSVRDKDQEI DSVQEKGVEV SSTPDPVGVE LESAPAKRGA 360 ELSSKNELHS TLGPLCYQIL NMEDVIPIST PLCSEHNGAH QTSQQCMSPN GYTSLSPTIG 420 KVSSQLTVDS ILRMAADSFP CTPSILRKRK RNKATPGSGN ELKTGGVNND SFYTPNGTNG 480 KDTTPRSFKT AASFSSLGSV DGLLTSVRSF DSSPPYQKRS KRMAIIKSVE KQLDFSADGL 540 DTSGSEIMNS PCHNSQGVDS NRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-73 | 65 | 218 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-73 | 65 | 218 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 445 | 452 | LRKRKRNK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.3749 | 0.0 | embryo| endosperm| meristem| ovary| pollen| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G081919 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G081919_P06 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043090 | 0.0 | BT043090.1 Zea mays full-length cDNA clone ZM_BFc0095F17 mRNA, complete cds. | |||
GenBank | BT054916 | 0.0 | BT054916.1 Zea mays full-length cDNA clone ZM_BFc0181A17 mRNA, complete cds. | |||
GenBank | EU970792 | 0.0 | EU970792.1 Zea mays clone 350916 myb-like DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151448.1 | 0.0 | uncharacterized protein LOC100285081 | ||||
Refseq | XP_008672992.1 | 0.0 | uncharacterized protein LOC100285081 isoform X1 | ||||
Refseq | XP_008672993.1 | 0.0 | uncharacterized protein LOC100285081 isoform X1 | ||||
Refseq | XP_020405376.1 | 0.0 | uncharacterized protein LOC100285081 isoform X1 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | B4G152 | 0.0 | B4G152_MAIZE; Myb domain protein 3r-3 | ||||
STRING | GRMZM2G081919_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-112 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G081919_P06 |
Entrez Gene | 100285081 |
Publications ? help Back to Top | |||
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