PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G081919_P06
Common Namepco131231
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 563aa    MW: 61659.3 Da    PI: 8.1692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G081919_P06genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52.1e-1565111148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT  Ede l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  GRMZM2G081919_P06  65 KGGWTLKEDETLRKAVEAFKGRNWKKIAEFFQ-DRTEVQCLHRWQKVL 111
                        688*****************************.************986 PP

2Myb_DNA-binding636.1e-20117163148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEde+++d+v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  GRMZM2G081919_P06 117 KGPWTQEEDEKIIDLVRKYGPTKWSIIAKSLP-GRIGKQCRERWHNHL 163
                        79******************************.*************97 PP

3Myb_DNA-binding582.2e-18169212146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +++WT+eE+  l+da++ +G++ W+ Ia+ ++ gRt++++k++w++
  GRMZM2G081919_P06 169 KDAWTPEEERALIDAHQVFGNK-WAEIAKVLP-GRTDNSIKNHWNS 212
                        679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.06560111IPR017930Myb domain
SMARTSM007176.3E-1364113IPR001005SANT/Myb domain
PfamPF002491.0E-1365111IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-1566121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-2167123IPR009057Homeodomain-like
CDDcd001676.13E-1268111No hitNo description
PROSITE profilePS5129433.01112167IPR017930Myb domain
SuperFamilySSF466899.54E-33114210IPR009057Homeodomain-like
SMARTSM007177.8E-19116165IPR001005SANT/Myb domain
PfamPF002491.2E-18117163IPR001005SANT/Myb domain
CDDcd001676.76E-17119163No hitNo description
Gene3DG3DSA:1.10.10.602.3E-27124170IPR009057Homeodomain-like
SMARTSM007179.2E-18168216IPR001005SANT/Myb domain
PROSITE profilePS5129423.454168218IPR017930Myb domain
PfamPF002491.7E-16169212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-25171218IPR009057Homeodomain-like
CDDcd001673.25E-14171214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MRAMAEVMQE GCVENRQPLA ASSSSVSDGS SCGGGERAGT SPPVSSSGNC ISVLRRTSGP  60
IRRTKGGWTL KEDETLRKAV EAFKGRNWKK IAEFFQDRTE VQCLHRWQKV LNPELIKGPW  120
TQEEDEKIID LVRKYGPTKW SIIAKSLPGR IGKQCRERWH NHLNPEIRKD AWTPEEERAL  180
IDAHQVFGNK WAEIAKVLPG RTDNSIKNHW NSSLKKKLEA YSNSSVLSVS KLFVHDDFKD  240
KMKPVATDGH LDLNQMPSIG SKDSSGRAYH SIVSPLSQAY NLDSSCLSLS IPTMQPLTSH  300
EMSSLIDGSA VTLVVQCLES DSVRDKDQEI DSVQEKGVEV SSTPDPVGVE LESAPAKRGA  360
ELSSKNELHS TLGPLCYQIL NMEDVIPIST PLCSEHNGAH QTSQQCMSPN GYTSLSPTIG  420
KVSSQLTVDS ILRMAADSFP CTPSILRKRK RNKATPGSGN ELKTGGVNND SFYTPNGTNG  480
KDTTPRSFKT AASFSSLGSV DGLLTSVRSF DSSPPYQKRS KRMAIIKSVE KQLDFSADGL  540
DTSGSEIMNS PCHNSQGVDS NRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-73652186159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-73652186159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445452LRKRKRNK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.37490.0embryo| endosperm| meristem| ovary| pollen| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G081919
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G081919_P06
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430900.0BT043090.1 Zea mays full-length cDNA clone ZM_BFc0095F17 mRNA, complete cds.
GenBankBT0549160.0BT054916.1 Zea mays full-length cDNA clone ZM_BFc0181A17 mRNA, complete cds.
GenBankEU9707920.0EU970792.1 Zea mays clone 350916 myb-like DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151448.10.0uncharacterized protein LOC100285081
RefseqXP_008672992.10.0uncharacterized protein LOC100285081 isoform X1
RefseqXP_008672993.10.0uncharacterized protein LOC100285081 isoform X1
RefseqXP_020405376.10.0uncharacterized protein LOC100285081 isoform X1
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLB4G1520.0B4G152_MAIZE; Myb domain protein 3r-3
STRINGGRMZM2G081919_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-112myb domain protein 3r-5
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]