PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G081816_P03 | ||||||||
Common Name | bHLH25, LOC100192921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 427aa MW: 43191.4 Da PI: 8.023 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.3 | 1.2e-07 | 327 | 367 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A Y++ L GRMZM2G081816_P03 327 ARQRRERISDRLRVLQKLVPGgA------KMDTASMLDEAASYLRFL 367 69******************966......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.773 | 318 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-13 | 324 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-13 | 324 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.19E-11 | 324 | 372 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-11 | 326 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-5 | 327 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MDHNLSDMTI LSEHAWGDEA GAVLLSPPEV GSVIEGGGGM TVLERLVLDE ALAAAILELQ 60 AIQQAAPGPA SCAGKQQLAA GGGGGVVGAE AAVAFPSMMA MAMAAPTPAY ADADVDAGVL 120 QRQQHHHRPH AAMGMPSPDY DLAPAAAATP AVAVTAAAPP AFTTNTNAAV DSGCSGLVVL 180 GRSPPPPVFS ASNETAATAS LDCEHGGGGR GGGRRQRRPN RKRKAAAEAE RSRPVRVAAA 240 AAQEESTLCS LLASTAPTTA GGIQIAFSTA AVHQQQHAAG GAGGAKTSAK PSSLSLSSSG 300 SSSNISFDGR NPARNVRISS DPQTVAARQR RERISDRLRV LQKLVPGGAK MDTASMLDEA 360 ASYLRFLKSQ VRDLQTLDRR NYGAASSNDA AATMAAVVGS SLSYNRGTGA MPAFTFPAAG 420 ETLRGAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 327 | 332 | RQRRER |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G081816 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G081816_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035033 | 0.0 | BT035033.1 Zea mays full-length cDNA clone ZM_BFb0033F20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458018.1 | 1e-105 | putative lysozyme-like protein | ||||
Refseq | XP_021311497.1 | 1e-105 | putative lysozyme-like protein | ||||
TrEMBL | B4FD45 | 0.0 | B4FD45_MAIZE; BHLH transcription factor | ||||
STRING | Sb03g025570.1 | 1e-104 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 1e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G081816_P03 |