PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G081816_P02
Common NamebHLH25, LOC100192921
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 427aa    MW: 43191.4 Da    PI: 8.023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G081816_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-07327367954
                        HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         r+RR+ri +++  L++l+P  a      K++ a++L +A  Y++ L
  GRMZM2G081816_P02 327 ARQRRERISDRLRVLQKLVPGgA------KMDTASMLDEAASYLRFL 367
                        69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-13324377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-13324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-11324372No hitNo description
Gene3DG3DSA:4.10.280.104.7E-11326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-5327367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDHNLSDMTI LSEHAWGDEA GAVLLSPPEV GSVIEGGGGM TVLERLVLDE ALAAAILELQ  60
AIQQAAPGPA SCAGKQQLAA GGGGGVVGAE AAVAFPSMMA MAMAAPTPAY ADADVDAGVL  120
QRQQHHHRPH AAMGMPSPDY DLAPAAAATP AVAVTAAAPP AFTTNTNAAV DSGCSGLVVL  180
GRSPPPPVFS ASNETAATAS LDCEHGGGGR GGGRRQRRPN RKRKAAAEAE RSRPVRVAAA  240
AAQEESTLCS LLASTAPTTA GGIQIAFSTA AVHQQQHAAG GAGGAKTSAK PSSLSLSSSG  300
SSSNISFDGR NPARNVRISS DPQTVAARQR RERISDRLRV LQKLVPGGAK MDTASMLDEA  360
ASYLRFLKSQ VRDLQTLDRR NYGAASSNDA AATMAAVVGS SLSYNRGTGA MPAFTFPAAG  420
ETLRGAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327332RQRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G081816
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G081816_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350330.0BT035033.1 Zea mays full-length cDNA clone ZM_BFb0033F20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458018.11e-105putative lysozyme-like protein
RefseqXP_021311497.11e-105putative lysozyme-like protein
TrEMBLB4FD450.0B4FD45_MAIZE; BHLH transcription factor
STRINGSb03g025570.11e-104(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-26bHLH family protein