PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G081816_P01 | ||||||||
Common Name | LOC100192921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 481aa MW: 48730.4 Da PI: 7.2859 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.1 | 1.4e-07 | 381 | 421 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A Y++ L GRMZM2G081816_P01 381 ARQRRERISDRLRVLQKLVPGgA------KMDTASMLDEAASYLRFL 421 69******************966......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.773 | 372 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.82E-11 | 378 | 426 | No hit | No description |
SMART | SM00353 | 8.0E-13 | 378 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-13 | 378 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-11 | 380 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-5 | 381 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MDHNLSDMTI LSEHAWGDEA GAVLLSPPEV GSVIEGGGGM TVLERLVLDE ALAAAILELQ 60 AIQQAAPGPA SCAGKQQLAA GGGGGVVGAE AAVAFPSMMA MAMAAPTPAY ADADVDAGVL 120 QRQQHHHRPH AAMGMPSPDY DLAPAAAATP AVAVTAAAPP AFTTNTNAAV DSGCSGLVVL 180 GRSPPPPVFS ASNETAATAS LDCEHGGGGR GGGRRQRRPN RKRKAAAEAE RSRPVRVAAA 240 AAQEESTLCS LLASTAPTTA GGIQIAFSTA AVHQQQHAAG GAGGAKTSAK PSSLSLSSSG 300 SSSNISFDGR NPARNGGGGG GGDPVYEPDT EALAQVKEMI YRAAAMRPVS LGSEDDAGAG 360 AERPPRRRNV RISSDPQTVA ARQRRERISD RLRVLQKLVP GGAKMDTASM LDEAASYLRF 420 LKSQVRDLQT LDRRNYGAAS SNDAAATMAA VVGSSLSYNR GTGAMPAFTF PAAGETLRGA 480 G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 381 | 386 | RQRRER |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G081816 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G081816_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035033 | 0.0 | BT035033.1 Zea mays full-length cDNA clone ZM_BFb0033F20 mRNA, complete cds. | |||
GenBank | KJ726857 | 0.0 | KJ726857.1 Zea mays clone pUT3398 bHLH transcription factor (bHLH25) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001351476.1 | 0.0 | uncharacterized protein LOC100192921 | ||||
Refseq | XP_008672099.1 | 0.0 | uncharacterized protein LOC100192921 | ||||
TrEMBL | A0A1D6NJV9 | 0.0 | A0A1D6NJV9_MAIZE; Transcription factor bHLH87 | ||||
STRING | GRMZM2G081816_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 | Representative plant | OGRP12893 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 4e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G081816_P01 |
Entrez Gene | 100192921 |