PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G081782_P01
Common NameZm.31675
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 290aa    MW: 32038.2 Da    PI: 8.2509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G081782_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-06262284223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp+C+k F+++ +L+ H  + H
  GRMZM2G081782_P01 262 VCPKCSKAFRDPVLLVEHVEKeH 284
                        7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.71E-13457No hitNo description
PROSITE profilePS510397.5031059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.109.2E-111051IPR000058Zinc finger, AN1-type
PfamPF014286.5E-141350IPR000058Zinc finger, AN1-type
SMARTSM001540.00171352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.8E-1091146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183108.89E-993143No hitNo description
PROSITE profilePS510397.76898145IPR000058Zinc finger, AN1-type
PfamPF014283.6E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.044101142IPR000058Zinc finger, AN1-type
SMARTSM003550.14224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85261289IPR007087Zinc finger, C2H2
SMARTSM003556.1261284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLDHR SYTSHQCPNA NMKDVTVLIC  60
PLCAKGVRLN PSEDPNITWD THVNTDCDPS NYQKVMKKKK CPVPGCRETL TFSNTIRCKD  120
CTREHCLKHR FGPDHKCPGP RKVDSGFPFV SMLRRSQKAE TRSNSSNNNG SSWWSSSLVN  180
AATNFKSSAE AGMQKLSTVT SQAFQKAKDG IAPNSSSSSG DLVEQCVHCP ARFSTVGALI  240
EHVEKSHQIN SQPSHGRVTI DVCPKCSKAF RDPVLLVEHV EKEHGGTSRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.316750.0endosperm| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G081782
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G081782_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412060.0BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106258.20.0AN1-type zinc finger protein 2B
SwissprotQ0D5B91e-170SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A3L6DXR30.0A0A3L6DXR3_MAIZE; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLB4FVR80.0B4FVR8_MAIZE; AN1-type zinc finger protein 2B
STRINGGRMZM2G081782_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]