PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G081406_P01
Common NameARF15, LOC103653810
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 689aa    MW: 73685 Da    PI: 7.3589
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G081406_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23125226199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   
  GRMZM2G081406_P01 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGAAWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL-- 212
                        89*****************************96555555..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++ l+v+++r+
  GRMZM2G081406_P01 213 RGDSGDLHVGIRRA 226
                        3478889*****97 PP
2Auxin_resp114.21.2e-37277360183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+ ++ FevvY+Prast+eF+v+++ v+ a++v++s+GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  GRMZM2G081406_P01 277 AARLAAAGQSFEVVYYPRASTPEFCVRAAAVRVAMRVQWSPGMRFKMAFETEDSSRISWfMGTVAGVQVTDPIRWPQSPWRLLQ 360
                        6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-37116228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-29119227IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-21124225No hitNo description
PROSITE profilePS5086312.901125227IPR003340B3 DNA binding domain
PfamPF023629.3E-22125226IPR003340B3 DNA binding domain
SMARTSM010196.9E-21125227IPR003340B3 DNA binding domain
PfamPF065071.1E-32277360IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MITFADLTEP AAAGAERCVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HALGLAGAAD  60
LSAARVPALV PCRVTAVRYM ADPDTDEVFA RIRLVPLRGG DADADAGGVE DDAAAADEQE  120
KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYAADP PVQTVVAKDV HGAAWKFRHI  180
YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRGDSGDLH VGIRRAKRGF CGAGGGGGDD  240
SPAAGWDHYA GLMRGNVSPC AAAKARGKVR PEDVAEAARL AAAGQSFEVV YYPRASTPEF  300
CVRAAAVRVA MRVQWSPGMR FKMAFETEDS SRISWFMGTV AGVQVTDPIR WPQSPWRLLQ  360
VTWDEPDLLQ NVKRVSPWLV ELVSSMPAIH LASFSPPRKK PRIPAYPEFP FEGQLLNPAF  420
PPNPLPHGQH HHHFLHSHSH QHHHPPFFPF PAGSAPAAIQ GARHAQFVPP FSELHLTHLQ  480
PSLLYPRLRR PDHVGPTTPI PARVSTDLTI GGAAAAARDD DDDDFPCAPP STGANRQKPD  540
AKPAGLVLFG RTILTEQQMS RSGATSPAAT GNSSTCWNAE KGPNASEGSG GSGVIQTSPA  600
KAASSERPPW LGGDGSQQQQ ASGELGLGLE PGQCKVFVES DTVGRNLDLA ALRSFDELYG  660
RLSGMFGVAG AELRSRVLYR GAAGDEPFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-781938151388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.339260.0ear| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G081406
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G081406_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9553850.0EU955385.1 Zea mays clone 1530377 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678832.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLD9HNU20.0D9HNU2_MAIZE; Auxin response factor
STRINGGRMZM2G081406_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-155auxin response factor 16