PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G081158_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 897aa    MW: 98369.2 Da    PI: 6.2304
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G081158_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23129230199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F   
  GRMZM2G081158_P01 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELVARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI-- 216
                        99*****************************85545444..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  GRMZM2G081158_P01 217 WNDNNQLLLGIRRA 230
                        7777788***9997 PP
2Auxin_resp1187.9e-39255338183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+ rWpnS+Wrs+k
  GRMZM2G081158_P01 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSERWPNSHWRSVK 338
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-47117258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-42121244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-21128229No hitNo description
PROSITE profilePS5086312.548129231IPR003340B3 DNA binding domain
PfamPF023621.4E-21129230IPR003340B3 DNA binding domain
SMARTSM010196.1E-25129231IPR003340B3 DNA binding domain
PfamPF065073.1E-34255338IPR010525Auxin response factor
PfamPF023092.4E-6760852IPR033389AUX/IAA domain
SuperFamilySSF542774.12E-6762839No hitNo description
PROSITE profilePS5174523.437763847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MNLSPPKMSE PSPESDGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN  60
KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETEEVYAQMT LQPLSPEEQK DPFLPIELGA  120
GSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELV ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA SRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP  360
LTTFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGNRGA QSLNFQGLGA  420
SPWLQPRIDN PLLSLKPDTY QQMAAAALEE IRAGDHLKQA SSLLPVQQTQ TLNGGLDHLY  480
GNPVLQQMQF QSQQSTLQAV QQGYGQNAND SGYVQNQLQQ LQLQKQQEPP PPQQQQQTQV  540
LQRQAHQEMQ QHLSASCHDI ANVASGVSMS GSACQSQSSL LSGSSFYQQN IFDGNGGPDL  600
HLHNSFHNFS SQESSNLLNL PRSGQLMASE GWPSKRLAVE SLAGHEIQPL QHKLEKVSHQ  660
STVSHCSGTL PPLSARDGSS AQACGTNVQS HLLPSSFAIH DGLSTIRSGG VGSGTDAITI  720
ASLRYSDANL LPENSIATSS CLGESGTFNS LDDVCGVNPS QGGTFVKVYK SGSLGRSLDI  780
TRFGSYYELR VELERLFGLE GQLEDPARSG WQLVFVDREN DVLLLGDDPW QEFVNSVGCI  840
KILSPQDLQQ MARGGGGDLL SAPGARMLQG SVCDDYSAGH DVQNLTGSIA PVVPLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621435943388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.790670.0cell culture| ear| embryo| endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G081158
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G081158_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279630.0KJ727963.1 Zea mays clone pUT6075 ARF transcription factor (ARF34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662061.20.0auxin response factor 25
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLA0A060D7X70.0A0A060D7X7_MAIZE; Auxin response factor (Fragment)
STRINGGRMZM2G081158_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]