PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G081127_P02
Common NameZEAMMB73_876821, Zm.4901
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 298aa    MW: 32642.3 Da    PI: 9.0605
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G081127_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP123.87.5e-39111187278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        Cqv+gC+adls a++yh+rhkvCe+h++++vv+++++e+rfCqqCsrfh l+efD++k+sCr+rLa+hn rrrk q+
  GRMZM2G081127_P02 111 CQVDGCQADLSGARDYHKRHKVCEAHTRTTVVCINNVEHRFCQQCSRFHLLHEFDDGKKSCRSRLAQHNGRRRKVQP 187
                        **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-31103172IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.599108185IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-36109189IPR004333Transcription factor, SBP-box
PfamPF031102.9E-29111184IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKKRRWWFEC EYAGGEGSAS PGYFAPRSTA SPSGFRLCSA APASRIRGEI DFGVVVDKRR  60
RLSPEEDGSG GCSNSAVADG DNSHVVCVQR GRNTEETRPR KGANSSTTPS CQVDGCQADL  120
SGARDYHKRH KVCEAHTRTT VVCINNVEHR FCQQCSRFHL LHEFDDGKKS CRSRLAQHNG  180
RRRKVQPQPA VNGNSMNEDQ SLSSTLFLLL KQLSGLESGS SSEQINHPNS LVNLLKNLAA  240
IASTHAYQDV LKNATSISSN DGNNAANGSI MHEQTIRSIP VRRESLAGKA LYRLLDSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-25103184384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KRRRL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G081127
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G081127_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349187.11e-169SBP-transcription factor 9
RefseqXP_008655451.11e-169squamosa promoter-binding-like protein 1
SwissprotQ9LGU71e-82SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLA0A1D6FAL81e-167A0A1D6FAL8_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
TrEMBLA0A1D6FAM01e-171A0A1D6FAM0_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
TrEMBLA0A1D6FAM31e-171A0A1D6FAM3_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
TrEMBLA0A3L6DSV11e-167A0A3L6DSV1_MAIZE; Squamosa promoter-binding-like protein 1
STRINGGRMZM2G081127_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-35SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]