PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G080731_P03 | ||||||||
Common Name | LOC100274148, ZEAMMB73_652258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 346aa MW: 38114.1 Da PI: 7.6683 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.5 | 3.8e-10 | 49 | 89 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k+ rr+++NReAAr+sR+RKka++e+Le+ +L++ ++L GRMZM2G080731_P03 49 KALRRLAQNREAARKSRLRKKAYVEQLENSRLKLSQLEQEL 89 788*************************9877777766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.1E-4 | 43 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.036 | 47 | 91 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.6E-7 | 49 | 94 | No hit | No description |
SuperFamily | SSF57959 | 9.38E-7 | 49 | 92 | No hit | No description |
Pfam | PF00170 | 2.8E-7 | 49 | 89 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 52 | 67 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.4E-32 | 134 | 210 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAYASPGTDD TSTDLDTDEK NHMLELGQLV SLTASDSGNK AKDKLLGQKA LRRLAQNREA 60 ARKSRLRKKA YVEQLENSRL KLSQLEQELQ RARQQGIFIP TPGDDQQPNS TSEKAGALAF 120 DKDYAGWEDE HRKQISELRA ALSAHAGDDE LRRIVDGVMA HHHEAFRLKC VAARADAFHV 180 LSGMWKTPVE RCFMWLGGFR PSEILKFLAS HLDPLTERQL ASVHGLQQSS QQAEEGISQR 240 VQALQQSVAE TLASSGSPCL PVPAGRAPPP GDDAAPDCSG TMAAAVAKLV ALESLVHEAD 300 GLRRQTLEQM QRVLTTRQSA RALLVISDYL SRLRALSSLW IARPRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.7472 | 0.0 | silk |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G080731 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G080731_P03 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037374 | 0.0 | BT037374.1 Zea mays full-length cDNA clone ZM_BFb0166L17 mRNA, complete cds. | |||
GenBank | BT042450 | 0.0 | BT042450.1 Zea mays full-length cDNA clone ZM_BFb0274O23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008654622.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Refseq | XP_008654623.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Refseq | XP_008654624.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Refseq | XP_008654625.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q41558 | 1e-145 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A3L6DJV5 | 0.0 | A0A3L6DJV5_MAIZE; Transcription factor TGAL1 | ||||
STRING | GRMZM2G080731_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 | Representative plant | OGRP722 | 16 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-121 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G080731_P03 |
Entrez Gene | 100274148 |
Publications ? help Back to Top | |||
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