PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G080168_P01 | ||||||||
Common Name | bHLH141, IDP1499, ZEAMMB73_435335, Zm.18099 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 469aa MW: 48787.1 Da PI: 7.5643 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27 | 7.8e-09 | 266 | 313 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq GRMZM2G080168_P01 266 SHSLAERVRREKIGERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 313 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.42E-10 | 260 | 317 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-16 | 260 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.516 | 262 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-16 | 262 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-6 | 266 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-10 | 268 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MAHDGFLGGF HELSWPLVHA AAAGAAPFDP LLVHVPHALM GAGAGWQHEA AVGAIVPSQS 60 QSQSPPPPPS SLAAAAVGGA DAVEAAMMEQ LASRLGVSVP SPPSSRYVSC HSTPVAPCVL 120 AGDAERAERL SCFPASGRKL SRVASSQSLL REQAPAPAPA PSPGAAAKQH AGDGACDGPC 180 RKRKASGTSS KQSKAKEAVT TAPPESRETA ETRAKKCKLS TDEERKPAAG EGWRGSGKGK 240 ELVAADAEPP KDYIHVRARR GQATDSHSLA ERVRREKIGE RMKLLQDLVP GCSKVTGKAV 300 MLDEIINYVQ SLQRQVEFLS MKLSTVNPRL ELGADDSFVP RDDANKMCAA ATSSISMAQQ 360 PLPLPAAYHA LEGSSPAFCY TTTPPAPGTA ARLGVAASDA KAFEMAPPSS AATVNHAGTA 420 ERRPLEGPAD ENASPQMGGR SLWEEGDDDL QSLVLMGFRG RHVIIGGPI |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G080168 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G080168_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037022 | 0.0 | BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001136483.1 | 0.0 | uncharacterized protein LOC100216597 | ||||
TrEMBL | B4FIT4 | 0.0 | B4FIT4_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G080168_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13313 | 25 | 32 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 2e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G080168_P01 |
Entrez Gene | 100216597 |