PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G079768_P01
Common NameLOB20, ZEAMMB73_883735
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 417aa    MW: 44604.5 Da    PI: 5.7951
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G079768_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.53.3e-36121218198
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaCk++rrkC++dC+lapyfpa+q+++f n h+lFG++++lk+l+++++e   +am++l++++++ra+dPv G++ +il+l++ql+ + a
  GRMZM2G079768_P01 121 ACAACKYQRRKCNTDCPLAPYFPADQQERFLNSHRLFGVRKILKTLENTSPELSANAMATLIFQSDMRAQDPVGGCYHLILSLERQLQIEMA 212
                        7***************************************************************************************9999 PP

             DUF260  93 elallk 98 
                        e +++ 
  GRMZM2G079768_P01 213 EHSAMV 218
                        987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575135No hitNo description
PROSITE profilePS5089121.422120221IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-34121215IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGAVIPRSLS YSYDDDAPDL GVVRGSTTIA IAAACAIWRA RGETMTSSVS PAAAASQPQL  60
HITTTGTSTG STAIISPSSN QSTSNARSSS PHSTSSPPRG PSTTGGTGSG GGSGSGCTNQ  120
ACAACKYQRR KCNTDCPLAP YFPADQQERF LNSHRLFGVR KILKTLENTS PELSANAMAT  180
LIFQSDMRAQ DPVGGCYHLI LSLERQLQIE MAEHSAMVQR LALFRQAATT MPPDQGGGTV  240
GLDYTASSKQ PLFHNAQQEV VYALYKNNHG GGHGPNKDDH GGQQHQVFDY YINLDNMQQF  300
HFNDSCAAVD KVDLTPAGAD EMRHHQHFDE NCQIDHKDYF EIKAAALVDD AFDMRQEVVD  360
VCAEVDMDTK TVDVNAGIGG VDIKAMGMNA NVDVNVSTPQ MAAESSHCRL GLGFSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1812221912113LOB family transfactor Ramosa2.1
5ly0_B2e-1812221912113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G079768
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G079768_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277690.0KJ727769.1 Zea mays clone pUT5716 LOB transcription factor (LOB20) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678551.20.0uncharacterized protein LOC103653417
TrEMBLK7U3U20.0K7U3U2_MAIZE; LOB transcription factor (Fragment)
STRINGGRMZM2G079768_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Representative plantOGRP55241021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-34LOB domain-containing protein 22