PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G079727_P02
Common NameLOC100279931
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29019.6 Da    PI: 8.0689
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G079727_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14e-2270119150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                        krien ++rq tf kRr g++KKA EL vLCd++ ++++fs +gkly y 
  GRMZM2G079727_P02  70 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDVDLLLLLFSGSGKLYHYL 119
                        79*********************************************996 PP
2K-box30.71.3e-11134230298
              K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                        ++++++++++   ++ + el+k ++  e +++e+R +  +d e+ ++  L+ Le+ Le ++ ++Rs K++ +  +i+ lq+  +  +ee   
  GRMZM2G079727_P02 134 EAATHSKVWADVRQERRAELEKAERMCELMEKELRFMTVDDGEQYTVPSLELLEHSLEAAVHRVRSEKDRKIGGEIDCLQNIIRGRHEERYG 225
                        56677889*************************************************************************99999999888 PP

              K-box  94 Lrkkl 98 
                        L  kl
  GRMZM2G079727_P02 226 LCDKL 230
                        87776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.1662122IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-3162121IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-2763150IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-226484IPR002100Transcription factor, MADS-box
PROSITE patternPS00350064118IPR002100Transcription factor, MADS-box
PfamPF003193.3E-2271118IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-228499IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-2299120IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.706146236IPR002487Transcription factor, K-box
PfamPF014868.2E-12146230IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSRYCVNEQS STRPHPASAG SWHGSTPAGS SPSNLKQATT GKEQLGGGCC SAARLRVRDD  60
DMGRGRSEIK RIENPTQRQS TFYKRRDGLF KKARELAVLC DVDLLLLLFS GSGKLYHYLS  120
PTVPTVKDLV ERYEAATHSK VWADVRQERR AELEKAERMC ELMEKELRFM TVDDGEQYTV  180
PSLELLEHSL EAAVHRVRSE KDRKIGGEID CLQNIIRGRH EERYGLCDKL AHSQAWNNGG  240
EGGGSTPPSG GGGLELKLGF N
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1582750.0ear| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G079727
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G079727_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876270.0BT087627.1 Zea mays full-length cDNA clone ZM_BFb0139G18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008672730.10.0MADS transcription factor isoform X4
SwissprotQ8S1511e-106MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A1D6NDG21e-164A0A1D6NDG2_MAIZE; Floral homeotic protein APETALA 3
STRINGGRMZM2G079727_P011e-165(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-17AGAMOUS-like 8
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]