PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G079727_P01 | ||||||||
Common Name | LOC100279931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 269aa MW: 30046.8 Da PI: 8.0689 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.1 | 4.2e-22 | 70 | 119 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien ++rq tf kRr g++KKA EL vLCd++ ++++fs +gkly y GRMZM2G079727_P01 70 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDVDLLLLLFSGSGKLYHYL 119 79*********************************************996 PP | |||||||
2 | K-box | 29.4 | 3.5e-11 | 134 | 226 | 2 | 94 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 ++++++++++ ++ + el+k ++ e +++e+R + +d e+ ++ L+ Le+ Le ++ ++Rs K++ + +i+ lq+ + +ee GRMZM2G079727_P01 134 EAATHSKVWADVRQERRAELEKAERMCELMEKELRFMTVDDGEQYTVPSLELLEHSLEAAVHRVRSEKDRKIGGEIDCLQNIIRGRHEERYG 225 56677889************************************************************************988888877765 PP K-box 94 L 94 L GRMZM2G079727_P01 226 L 226 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.16 | 62 | 122 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-31 | 62 | 121 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-27 | 63 | 150 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-22 | 64 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 64 | 118 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-22 | 71 | 118 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-22 | 84 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-22 | 99 | 120 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-11 | 146 | 229 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.344 | 146 | 237 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MSRYCVNEQS STRPHPASAG SWHGSTPAGS SPSNLKQATT GKEQLGGGCC SAARLRVRDD 60 DMGRGRSEIK RIENPTQRQS TFYKRRDGLF KKARELAVLC DVDLLLLLFS GSGKLYHYLS 120 PTVPTVKDLV ERYEAATHSK VWADVRQERR AELEKAERMC ELMEKELRFM TVDDGEQYTV 180 PSLELLEHSL EAAVHRVRSE KDRKIGGEID CLQNIIRGRH EERYGLCDKN FLQIWPQLAH 240 SQAWNNGGEG GGSTPPSGGG GLELKLGFN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.158275 | 0.0 | ear| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G079727 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G079727_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055153 | 0.0 | BT055153.1 Zea mays full-length cDNA clone ZM_BFc0171E10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020405265.1 | 0.0 | MADS transcription factor isoform X3 | ||||
Swissprot | Q8S151 | 1e-103 | MAD32_ORYSJ; MADS-box transcription factor 32 | ||||
TrEMBL | A0A1D6NDG2 | 0.0 | A0A1D6NDG2_MAIZE; Floral homeotic protein APETALA 3 | ||||
STRING | GRMZM2G079727_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11923 | 34 | 39 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-17 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G079727_P01 |
Publications ? help Back to Top | |||
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