PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G079727_P01
Common NameLOC100279931
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30046.8 Da    PI: 8.0689
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G079727_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14.2e-2270119150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                        krien ++rq tf kRr g++KKA EL vLCd++ ++++fs +gkly y 
  GRMZM2G079727_P01  70 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDVDLLLLLFSGSGKLYHYL 119
                        79*********************************************996 PP

2K-box29.43.5e-11134226294
              K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                        ++++++++++   ++ + el+k ++  e +++e+R +  +d e+ ++  L+ Le+ Le ++ ++Rs K++ +  +i+ lq+  +  +ee   
  GRMZM2G079727_P01 134 EAATHSKVWADVRQERRAELEKAERMCELMEKELRFMTVDDGEQYTVPSLELLEHSLEAAVHRVRSEKDRKIGGEIDCLQNIIRGRHEERYG 225
                        56677889************************************************************************988888877765 PP

              K-box  94 L 94 
                        L
  GRMZM2G079727_P01 226 L 226
                        5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.1662122IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-3162121IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-2763150IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-226484IPR002100Transcription factor, MADS-box
PROSITE patternPS00350064118IPR002100Transcription factor, MADS-box
PfamPF003193.5E-2271118IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-228499IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-2299120IPR002100Transcription factor, MADS-box
PfamPF014863.0E-11146229IPR002487Transcription factor, K-box
PROSITE profilePS512979.344146237IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSRYCVNEQS STRPHPASAG SWHGSTPAGS SPSNLKQATT GKEQLGGGCC SAARLRVRDD  60
DMGRGRSEIK RIENPTQRQS TFYKRRDGLF KKARELAVLC DVDLLLLLFS GSGKLYHYLS  120
PTVPTVKDLV ERYEAATHSK VWADVRQERR AELEKAERMC ELMEKELRFM TVDDGEQYTV  180
PSLELLEHSL EAAVHRVRSE KDRKIGGEID CLQNIIRGRH EERYGLCDKN FLQIWPQLAH  240
SQAWNNGGEG GGSTPPSGGG GLELKLGFN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1582750.0ear| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G079727
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G079727_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0551530.0BT055153.1 Zea mays full-length cDNA clone ZM_BFc0171E10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020405265.10.0MADS transcription factor isoform X3
SwissprotQ8S1511e-103MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A1D6NDG20.0A0A1D6NDG2_MAIZE; Floral homeotic protein APETALA 3
STRINGGRMZM2G079727_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-17AGAMOUS-like 8
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]