PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G079653_P01 | ||||||||
Common Name | EREB138, LOC100283213, Zm.53309 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 22154.9 Da PI: 7.8802 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.8e-19 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp k++r++lg+f++ae+Aa+a++aa++ l+g GRMZM2G079653_P01 18 RFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARMLRG 67 59*******.**********83...36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.0E-36 | 18 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.406 | 18 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-13 | 18 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.37E-17 | 18 | 74 | No hit | No description |
PRINTS | PR00367 | 3.2E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 19 | 76 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 19 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MRRRGVAAAE ADGDVELRFR GVRKRPWGRY AAEIRDPAKK ARVWLGTFDS AEDAARAYDA 60 AARMLRGPKA RTNFPLPAAA ALHHHHMPAA AAAAAPPYTT YPTATGVSTP PVARPACSSL 120 SSTVESFSGA RPRPVLPPRF PPPSIPDGDC RSDCGSSASV VDDDCTDAAA SASCPFPLPF 180 DLNLPPGSGG GAGVGFYADE EDELRLTALR L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 19 | 76 | 6 | 64 | ATERF1 |
3gcc_A | 3e-21 | 19 | 76 | 6 | 64 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.53309 | 0.0 | cell culture| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G079653 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G079653_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728206 | 0.0 | KJ728206.1 Zea mays clone pUT6482 AP2-EREBP transcription factor (EREB138) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149587.2 | 1e-147 | uncharacterized protein LOC100283213 | ||||
Swissprot | O80339 | 7e-38 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A060D2G6 | 1e-146 | A0A060D2G6_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G079653_P01 | 1e-147 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 1e-21 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G079653_P01 |
Entrez Gene | 100283213 |
Publications ? help Back to Top | |||
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