PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G079632_P01
Common NameLOC100273749, Zma000584
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 300aa    MW: 33628.8 Da    PI: 5.1564
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G079632_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.16.1e-52241491128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv +yL+++++g++ ++ ++i+evd+y+++PwdLp+++  +++ewyfF++rd+ky++g+r+nra+ sgyWkatg dk+v
  GRMZM2G079632_P01  24 LPPGFRFHPTDEELVAHYLCARAAGRRPPV-SIIAEVDLYRFDPWDLPERALFGRREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPV 114
                        79*************************999.89***************87778999************************************ PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +g++ g+kk Lvfy+g+ p+g+kt+W+mheyrl
  GRMZM2G079632_P01 115 EH-EGRTAGIKKALVFYHGKPPRGVKTEWIMHEYRL 149
                        *9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-6220178IPR003441NAC domain
PROSITE profilePS5100558.97324178IPR003441NAC domain
PfamPF023659.9E-2725149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVAMAAVQQQ QQQQRRDAEA ELNLPPGFRF HPTDEELVAH YLCARAAGRR PPVSIIAEVD  60
LYRFDPWDLP ERALFGRREW YFFTPRDRKY PNGSRPNRAA GSGYWKATGA DKPVEHEGRT  120
AGIKKALVFY HGKPPRGVKT EWIMHEYRLA EAGGARAKKS GAGTLRLDDW VLCRLYNKKN  180
EWEKMQQQKE KEKKAMESEA SLSHSHSDTR TPESEIDDDP FPELGSLPAF DDMGAAPAPA  240
GVVLPKEEVE DFGDLGGDDW LAGINLDDLQ MPGDAADFYG SMLVSPMAAK MEPDGGFPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-95121843174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.787200.0cell culture| endosperm| glume| meristem| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G079632
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G079632_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417450.0BT041745.2 Zea mays full-length cDNA clone ZM_BFb0043E11 mRNA, complete cds.
GenBankDQ2442800.0DQ244280.1 Zea mays clone 4143 mRNA sequence.
GenBankKP2835360.0KP283536.1 Zea mays NAC protein (Zma000584) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141629.20.0uncharacterized protein LOC100273749
SwissprotQ7EZT11e-122NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLB4FXA70.0B4FXA7_MAIZE; NAC domain-containing protein 2
STRINGGRMZM2G079632_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.18e-74NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Lu M,Sun QP,Zhang DF,Wang TY,Pan JB
    Identification of 7 stress-related NAC transcription factor members in maize (Zea mays L.) and characterization of the expression pattern of these genes.
    Biochem. Biophys. Res. Commun., 2015. 462(2): p. 144-50
    [PMID:25937463]
  4. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  5. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]