PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G079470_P01
Common NameGRAS33, LOC100274201
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 645aa    MW: 67236.9 Da    PI: 6.4735
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G079470_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.53.1e-872826442374
               GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                        v++L e+A+  ++gd+  a+++Larl+ +   +  +g+p+ R a+yf+eAL+  l+ +++ l+   pp  +++++++ +l a+k+fsevsP+
  GRMZM2G079470_P01 282 VDQLAEAARLAEAGDAFGAREILARLNYRlpaVPTAGTPLLRSAFYFKEALRVALSPTGEALA---PPAVSTPYDVVLKLGAYKAFSEVSPV 370
                        689*************************999455566*******************9555554...777778889***************** PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        l+f+hlt+ qa+l+++  + r+H++D+di++G QW++L+q+La+R +++++l++T+++sp+s++  el+ ++e+L+ fA+elgv ++f +  
  GRMZM2G079470_P01 371 LQFAHLTCVQAVLDELGAAGRIHVLDLDIGMGEQWASLMQELAQR-SPAATLKVTALVSPASHHPLELNLIHENLSGFARELGVFLQFAAY- 460
                        ********************************************9.7889***************************************95. PP

               GRAS 183 akrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                          ++++l++ eL ++ +g+a+aV+l +   ++         + ++vL+lvk+l +kvvv v++ +d+++ sF +++l+a++ +++l+ds++a
  GRMZM2G079470_P01 461 --NVDALDPAELvAITSGDAVAVHLPVGSAHVA--------AMPAVLRLVKRLGAKVVVSVDRGCDRTELSFSTHLLQAFQSCVSLLDSIDA 542
                        ..899999999945566***********99998........4566*********************************************99 PP

               GRAS 274 klpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                          ++++e+   +Er++++++++  v  ++++    ++     Wr  l +aGF pv+ s++a++qa++ll++++  g+rve++ g+l+l+W++
  GRMZM2G079470_P01 543 VGGADAEAVGRIERFMVQPDVERRVVSRHRAaVAVDKPPPLPWRTVLASAGFVPVQASTFAESQAEALLKRMALMGFRVEKRGGALCLYWQR 634
                        999******************987777777714455666789************************************************** PP

               GRAS 365 rpLvsvSaWr 374
                         +LvsvSaWr
  GRMZM2G079470_P01 635 GELVSVSAWR 644
                        *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.399255624IPR005202Transcription factor GRAS
PfamPF035141.1E-84282644IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MRGMLFAGSA REGHAGTLLQ LQLQHQRQGL AAGKVSGAGD LWEPTSVLDR RHSPSPSPPT  60
SVPTLSSPLG AATAGVAALA GANAKNVSPP PVAAAAWPGG GGAEEAVAGG KEEWQLTPLD  120
MGLGAGEGWD AADAAAPPGL APDHTFLRWI IGGEDASAAM GSVMDPPVLE LDHAPSMMSP  180
AFGSTMPFAP AMEDAKPVPF GHTPNFLLHH CHQHHPQPHA AFFGSHPSLD AAPQPKRPHP  240
MAGAPAPKLP SFPGPVAQAG GGFASALKPK AEAGNDEAAA AVDQLAEAAR LAEAGDAFGA  300
REILARLNYR LPAVPTAGTP LLRSAFYFKE ALRVALSPTG EALAPPAVST PYDVVLKLGA  360
YKAFSEVSPV LQFAHLTCVQ AVLDELGAAG RIHVLDLDIG MGEQWASLMQ ELAQRSPAAT  420
LKVTALVSPA SHHPLELNLI HENLSGFARE LGVFLQFAAY NVDALDPAEL VAITSGDAVA  480
VHLPVGSAHV AAMPAVLRLV KRLGAKVVVS VDRGCDRTEL SFSTHLLQAF QSCVSLLDSI  540
DAVGGADAEA VGRIERFMVQ PDVERRVVSR HRAAVAVDKP PPLPWRTVLA SAGFVPVQAS  600
TFAESQAEAL LKRMALMGFR VEKRGGALCL YWQRGELVSV SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2731364432375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.116820.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G079470
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G079470_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277570.0KJ727757.1 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142045.20.0uncharacterized protein LOC100274201
TrEMBLA0A060D6K60.0A0A060D6K6_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G079470_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.19e-81GRAS family protein