PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G079458_P04
Common NameLOC100191782, MYBR21, ZEAMMB73_042104
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 299aa    MW: 33065.2 Da    PI: 9.3987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G079458_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-073072445
                       S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45
                       WT+ E +++ +a + l     +W+ +ar ++ gRt  +++s++ 
  GRMZM2G079458_P04 30 WTAAENKQFERALAGLDLCrpDWEEVARAIP-GRTVREVVSHFK 72
                       ****************99999**********.**********97 PP
2Myb_DNA-binding46.87e-15140184347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  GRMZM2G079458_P04 140 PWTEEEHRLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 184
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.472579IPR017884SANT domain
SMARTSM007170.112677IPR001005SANT/Myb domain
SuperFamilySSF466893.52E-83082IPR009057Homeodomain-like
CDDcd001674.12E-63074No hitNo description
PROSITE profilePS5129418.9133189IPR017930Myb domain
SuperFamilySSF466895.38E-18134189IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-17136187IPR006447Myb domain, plants
SMARTSM007173.0E-13137187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-12137183IPR009057Homeodomain-like
PfamPF002492.9E-12140184IPR001005SANT/Myb domain
CDDcd001677.84E-12140185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MMRETYMDVL PPVDHIAARS NWFPAAARLW TAAENKQFER ALAGLDLCRP DWEEVARAIP  60
GRTVREVVSH FKHLEVDVQQ IESGQVPLPA YGGGASSFTL QWDGYGPGPG DFRHGYRFAG  120
GCGRRHHGRT PEQERKKGVP WTEEEHRLFL LGLKKYGKGD WRNISRNFVQ TRTPTQVASH  180
AQKYFIRLNS GGKDKRRSSI HDITTVNLTD DQPPSPSQSS LITSQSNAPA PSPAPAPAAG  240
ICQVPLAADV KRHGAGTLPF SSPNRTSAVP AYRMEFHDQQ GLQCGPLHDQ LLASQSVLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-132591673RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1187620.0cell culture| ear| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G079458
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G079458_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0339860.0BT033986.1 Zea mays full-length cDNA clone ZM_BFc0061A06 mRNA, complete cds.
GenBankBT0343700.0BT034370.1 Zea mays full-length cDNA clone ZM_BFc0165H07 mRNA, complete cds.
GenBankBT0345320.0BT034532.1 Zea mays full-length cDNA clone ZM_BFc0182F07 mRNA, complete cds.
GenBankBT0358830.0BT035883.1 Zea mays full-length cDNA clone ZM_BFb0086O13 mRNA, complete cds.
GenBankBT0605690.0BT060569.1 Zea mays full-length cDNA clone ZM_BFb0017A18 mRNA, complete cds.
GenBankBT0638470.0BT063847.1 Zea mays full-length cDNA clone ZM_BFc0112L18 mRNA, complete cds.
GenBankBT0872960.0BT087296.1 Zea mays full-length cDNA clone ZM_BFb0032A23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130679.10.0uncharacterized protein LOC100191782
RefseqXP_008654259.10.0putative MYB DNA-binding domain superfamily protein isoform X1
RefseqXP_008654260.10.0putative MYB DNA-binding domain superfamily protein isoform X1
SwissprotQ8S9H72e-78DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB4FA480.0B4FA48_MAIZE; Duplicated homeodomain-like superfamily protein
STRINGGRMZM2G079458_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-68MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]