PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G079365_P01 | ||||||||
Common Name | bZIP110, LOC100273609, ZEAMMB73_514804 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 338aa MW: 36337.4 Da PI: 6.517 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.9 | 1.4e-10 | 179 | 237 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +++ eLe+kv++L++e ++L +l l+ + l++e+ GRMZM2G079365_P01 179 KRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTTEN 237 9**********************************************999888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.5E-15 | 175 | 239 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.013 | 177 | 240 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.5E-11 | 179 | 233 | No hit | No description |
SuperFamily | SSF57959 | 1.05E-10 | 179 | 230 | No hit | No description |
Pfam | PF00170 | 2.5E-9 | 179 | 237 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 3.71E-25 | 180 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MDPRFPPPAP SSCFGGGGEL PARGHHRRAH SETFIRLPDA DLLLDPDADF GFSDIDFPSL 60 SDDSPAASDP TPQPQAPPLQ PPLQQAASPA SAAPPRPPSG AHMRSLSLDA AFFDGLSLQG 120 GGGGGGVRGG MAGHKRSGSM DGDTSPFEGE SAPPSVLPDY AKKAVPDDKL AELALLDPKR 180 AKRILANRQS AARSKERKIK YTSELERKVQ TLQTEATTLS AQLTLLQRDT SGLTTENREL 240 KLRLQAMEEQ AKLRDALNDA LREEVQRLKI AAGQVPNMNG NPFNGGLSQQ QQMPSYFSQP 300 QQMQYFSGHQ GQHHHPKHDP QNSSNGGGQP LSDSMDFM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.118960 | 0.0 | pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G079365 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in dividing cells, present in leaves, roots and seedlings. {ECO:0000269|PubMed:15108305, ECO:0000269|PubMed:15824315}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions. {ECO:0000269|PubMed:11432846, ECO:0000269|PubMed:12124400, ECO:0000269|PubMed:15108305, ECO:0000269|PubMed:15824315, ECO:0000269|PubMed:17947581, ECO:0000269|PubMed:19820165, ECO:0000269|PubMed:20547563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G079365_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptionally activated during the acquisition of pluripotentiality (in protoplasts) by pericentromeric chromatin decondensation and DNA demethylation. Targeted to degradation by the proteasome by VBF and Agrobacterium virF in SCF(VBF) and SCF(virF) E3 ubiquitin ligase complexes after mediating T-DNA translocation to the nucleus. {ECO:0000269|PubMed:15108305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041487 | 0.0 | BT041487.1 Zea mays full-length cDNA clone ZM_BFc0033F19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141497.1 | 0.0 | uncharacterized LOC100273609 | ||||
Swissprot | Q9MA75 | 2e-74 | VIP1_ARATH; Transcription factor VIP1 | ||||
TrEMBL | B4FWJ9 | 0.0 | B4FWJ9_MAIZE; BZIP transcription factor | ||||
STRING | GRMZM2G079365_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1925 | 38 | 92 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43700.1 | 6e-53 | VIRE2-interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G079365_P01 |
Entrez Gene | 100273609 |