PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G078954_P01 | ||||||||
Common Name | Zm.137096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 672aa MW: 73548.1 Da PI: 9.1013 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.1 | 1.5e-31 | 318 | 456 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....s 80 lp+G++F+P+d+el+++ ++k+ ++ ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r ++ + GRMZM2G078954_P01 318 LPKGVKFDPSDQELIWHLMAKH-GKSGikphpfIDEFIPtVEEDeGICYTHPQKLP-GVKQNGSVSHFFHRTFKAYNTGTRKRRRINtddaD 407 799************7666554.44443555442322222333336**********.667778899*****************964434667 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k+vl+ +g++ g+kk++v+y + k+ekt+Wv+h+y+l GRMZM2G078954_P01 408 VRWHKTGKTKPVLV-DGKHLGCKKIMVLYisPLKGGKAEKTNWVIHQYHL 456 89************.999***********6523777778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-35 | 306 | 475 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.849 | 318 | 475 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-13 | 319 | 456 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MVRGPVPTVG AGGTPYTPPT VLEEATPPSW VAGEELFRRG NLSSDSISGL AFALPHESGF 60 PQTGLSRRVL RTGSSQGGDG GSLVGDRWRG RRRINDRRRG DWRGRVLRTG NPRRRGICHS 120 RKDRCGARRG EGPSGGNGPC PPRRPKHSSS GRRDGGGSTK RRGPYPGREG RELGIHGRRE 180 DPGALAALGG VWSGGTEAGR AGARTWALLA GAARLLAALA WDRGRAGPGE QSGALAALPC 240 ARRGRGRVGP PKAGRGGQSG APGRSGWVRP LAGAAAGAGG APGRDDGSRE GRWRLHREGR 300 WNPWLDTMSQ VVHQWPGLPK GVKFDPSDQE LIWHLMAKHG KSGIKPHPFI DEFIPTVEED 360 EGICYTHPQK LPGVKQNGSV SHFFHRTFKA YNTGTRKRRR INTDDADVRW HKTGKTKPVL 420 VDGKHLGCKK IMVLYISPLK GGKAEKTNWV IHQYHLGTGE DERDGEYVVS KLFFQQQFKP 480 GDKNAQELTT SDDLESMAAE SNLPDFTTLP TDKHVGTVQE VVHNPEHNLY QLNRNCEISI 540 EETVVLPPSV KTTKDGDNLQ SQDQKLWEGD SQFELLDSQQ LAEGLALCDE FLLSQSQTSC 600 GGGDEPRETK PCLAAYAHLS AEDFKKDLEC QRLEPTDNTN LELDNTDEFR LSQIEFSQDS 660 FMTWAAEKIT DD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 395 | 399 | RKRRR |
2 | 396 | 400 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.20269 | 0.0 | meristem| ovary| pollen| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G078954 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G078954_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055862 | 0.0 | BT055862.1 Zea mays full-length cDNA clone ZM_BFb0341H11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348999.1 | 0.0 | uncharacterized protein LOC100280252 | ||||
Swissprot | Q6NQK2 | 1e-109 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1D6LWF7 | 0.0 | A0A1D6LWF7_MAIZE; NAC domain-containing protein 8 | ||||
STRING | GRMZM2G078954_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 | Representative plant | OGRP8264 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-111 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G078954_P01 |