PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G078820_P01
Common NameLOC100193529
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 308aa    MW: 32483.3 Da    PI: 8.8564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G078820_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-191257147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + 
  GRMZM2G078820_P01 12 RGPWSPEEDEALRRLVERHGARNWTAIGRGVP-GRSGKSCRLRWCNQ 57
                       89******************************.***********985 PP
2Myb_DNA-binding521.7e-1664106145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        r ++T++Ed  +++a+++lG++ W++Iar ++ gRt++ +k++w+
  GRMZM2G078820_P01  64 RRPFTADEDAAIARAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 106
                        679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.578762IPR017930Myb domain
SuperFamilySSF466891.03E-309105IPR009057Homeodomain-like
SMARTSM007176.8E-171160IPR001005SANT/Myb domain
PfamPF002492.4E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-241364IPR009057Homeodomain-like
CDDcd001674.21E-161456No hitNo description
PROSITE profilePS5129418.5263113IPR017930Myb domain
SMARTSM007171.0E-1463111IPR001005SANT/Myb domain
PfamPF002493.3E-1464106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2165113IPR009057Homeodomain-like
CDDcd001671.69E-1166106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGAEAAERDR IRGPWSPEED EALRRLVERH GARNWTAIGR GVPGRSGKSC RLRWCNQLSP  60
RVARRPFTAD EDAAIARAHA RLGNRWAAIA RLLPGRTDNA VKNHWNCSLK RKLGAAAAAS  120
GSAVSADDSA AAAETEARRG KMMMMSISPP DSPSGSGSGS DRSDLSSHGA GSGSGSGSGQ  180
IYRPVAARSG GFEPADCAMS RPQEEDPLTA LSLSLPGTDQ RFHHHSAAAD SHFQELPPSP  240
SSPAPSAYPF SPEFAAAMQQ LIRTEVQRYM ASAGLRAGCG AVGATDLCMP QLVDGVMRAA  300
AEQVGRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-3991134108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1013100.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G078820
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G078820_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0423220.0BT042322.1 Zea mays full-length cDNA clone ZM_BFb0202M08 mRNA, complete cds.
GenBankBT0883200.0BT088320.1 Zea mays full-length cDNA clone ZM_BFc0135F20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132112.20.0uncharacterized protein LOC100193529
TrEMBLB4FYY40.0B4FYY4_MAIZE; MYB transcription factor TaMYB1
STRINGGRMZM2G078820_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-47myb domain protein r1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]