PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G078274_P03
Common NameLOC100382863
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 786aa    MW: 87433 Da    PI: 6.2571
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G078274_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.6e-22133233198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  GRMZM2G078274_P03 133 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 220
                        99***********************9*****86555544..8************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        ++++ +l+++++ 
  GRMZM2G078274_P03 221 WNEKNQLLLGIRH 233
                        8888889999986 PP
2Auxin_resp110.81.4e-36259342183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras++eFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  GRMZM2G078274_P03 259 AAHAAATNSRFTIFYNPRASPTEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 342
                        79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-48118262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-40125248IPR015300DNA-binding pseudobarrel domain
CDDcd100178.11E-21132225No hitNo description
PfamPF023622.2E-20133233IPR003340B3 DNA binding domain
SMARTSM010193.0E-22133235IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97133235IPR003340B3 DNA binding domain
PfamPF065074.6E-32259342IPR010525Auxin response factor
SuperFamilySSF542771.18E-5712786No hitNo description
PROSITE profilePS5174523.555718786IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MSSSSAASIG QPPPPAPPPE EEKKCLNSEL WHACAGPLVC LPTVGTRVVY FPQGHSEQVA  60
ASTNKEVDGH IPNYPNLPPQ LICQLHDVTM HADVETDEVY AQMTLQPLNP QEQNDAYLPA  120
EMGIMSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD  180
VEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRHATRPQTV  240
MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPT EFVIPLSKYI KAVFHTRISV  300
GMRFRMLFET EESSVRRYMG TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW  360
EIEPLTTFPM YPSLFPLRVK HPWYSGLAAL HDDSNALMWL RGVTGEGGFH SLNFQSPGIG  420
SWGQQRLHPS LLSNDHDQYQ AVVAAAAASQ SGGYLKQQFL HLQQPMQSPQ EQCNLNPLLQ  480
QQILQQASQQ QMVSSDAQNI QSVLNPGAIQ QQLHQLQQMQ HTHNDQKQKI QPDQQYQVAS  540
SAVLPSPTSL PSHLREKFGF SDPNVNSSSF ISSSSNENML ESNFLQVSSK SVDLSRFNQP  600
VVSEQQQPQQ QQAWKQKFMG SQSMSFGGSV SLNSPTSKDG SVDNKVGRDV QNQSLFSPQV  660
DSSSLLYNMV PNLTSNVADN NISAFPSGST YLQSPMYGCL DDSSGLLQNT GENDPTTRTF  720
VKVYKSGSVG RSLDITRFSN YAELREELGQ MFGIKGQLDD PDRSGWQLVF VDRENDVLLL  780
GDDPWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612236347388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.69040.0aerial organ| ear| meristem| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G078274
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G078274_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349277.10.0uncharacterized protein LOC100384328
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
TrEMBLA0A1D6DTT60.0A0A1D6DTT6_MAIZE; Auxin response factor
STRINGGRMZM2G078274_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]