PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G078077_P01 | ||||||||
Common Name | ZEAMMB73_102369, Zm.129784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 218aa MW: 22969.7 Da PI: 10.5719 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.5 | 8.4e-37 | 34 | 217 | 2 | 126 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..........seceaesssssas 83 agkk +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a s++++++ +++++ GRMZM2G078077_P01 34 AGKKEGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIVAATGSGTTPAvfvsssapstSSSSHSHYQQQQQ 125 899*************************************************************5555533332222111122222222222 PP TCP 84 nsssg..................................................kaaksaakskksqksaasalnlak.esrakararare 124 ++ + +a + + ++q++++++lnl + s a ra+a e GRMZM2G078077_P01 126 QQ--QatvvvlgkrpreeggdaaaasvpafwaaaprttaaadaswgfspleaqqaAAGYVPMAQAQQQQHHHHHLNLLAaLSGAARRAEAAE 215 22..1357788888888888888888888888888888888888888888876542222222333333333334444443666777777777 PP TCP 125 rt 126 +t GRMZM2G078077_P01 216 ET 217 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-32 | 39 | 128 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.032 | 40 | 94 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MATTRDVSAA SAAAMFHVYQ PMPMPSTAAA PAKAGKKEGG KDRHSKVNGR GRRVRMPIVC 60 AARVFQLTRE LGLKSDGQTI EWLLRQAEPS IVAATGSGTT PAVFVSSSAP STSSSSHSHY 120 QQQQQQQQAT VVVLGKRPRE EGGDAAAASV PAFWAAAPRT TAAADASWGF SPLEAQQAAA 180 GYVPMAQAQQ QQHHHHHLNL LAALSGAARR AEAAEETR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G078077 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G078077_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976899 | 0.0 | EU976899.1 Zea mays clone 993196 TCP-domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266729.2 | 1e-155 | uncharacterized protein LOC100284201 | ||||
Swissprot | Q9FMX2 | 9e-42 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | K7TYK6 | 1e-155 | K7TYK6_MAIZE; TCP-domain protein | ||||
STRING | GRMZM2G078077_P01 | 1e-156 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 6e-36 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G078077_P01 |