PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G077752_P01
Common NameLOC100857065, ZEAMMB73_976338, Zm.30080
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SRS
Protein Properties Length: 360aa    MW: 36620.3 Da    PI: 7.9847
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G077752_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.39.5e-691202902154
             DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelkskkq 83 
                        +sg+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq +a+ s++++ ++          +++ask++r    ++q
  GRMZM2G077752_P01 120 GSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCNTHVKSTWVPAARRRERQQLAASGSASSSPATasaaavaasaSASASKKPR--LLSSQ 209
                        57889**********************************************9998876554433333568888754444455555..56999 PP

             DUF702  84 salsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        +++s+t++s+a+++++++t+s          lP++v+++avf+cvrv+s++dge+e+aYq++v+i+Gh+fkG+LydqG+++
  GRMZM2G077752_P01 210 TTTSHTSTSNATTPRSFDTTSshqdasfrdsLPRQVRAPAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPDD 290
                        999***************99999********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.5E-63123289IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-26125167IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.2E-28241288IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MRQAAAMNYG MADVGMVVVA PAASFHHTHH HHHHHEAAAA AAAAAAASGD PIFPLLSGGP  60
CVLDPDKSAS ASAIQFWQQQ PPPPSSPAAA AGANPNPSAS PFAYLKKPLP MLDAGAGSSG  120
SGATTCQDCG NQAKKDCGHN RCRTCCKSRG FDCNTHVKST WVPAARRRER QQLAASGSAS  180
SSPATASAAA VAASASASAS KKPRLLSSQT TTSHTSTSNA TTPRSFDTTS SHQDASFRDS  240
LPRQVRAPAV FKCVRVTSIE DGEDEYAYQA TVTINGHLFK GFLYDQGPDD GRHAATSNDD  300
CTAGGVPNIS ELHLGAASGS GAGTGTSMSM APPTGLYGGG GGGHHPHILG GSSSYGNTMN
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G077752
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}.
UniprotTISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G077752_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587810.0HQ858781.1 Zea mays clone UT1767 SRS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656860.10.0protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK97e-65LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLF1DK230.0F1DK23_MAIZE; SRS transcription factor (Fragment)
STRINGGRMZM2G077752_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-46Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]