PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G076896_P02
Common NameLOC100280929, ZEAMMB73_603279
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 328aa    MW: 34228.8 Da    PI: 7.3048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G076896_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20137186255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  GRMZM2G076896_P02 137 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDVAALRFRG 186
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-33137196IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-23137196IPR016177DNA-binding domain
PROSITE profilePS5103226.134137194IPR001471AP2/ERF domain
PfamPF008479.3E-14137186IPR001471AP2/ERF domain
SMARTSM003809.4E-38137200IPR001471AP2/ERF domain
PRINTSPR003677.6E-12138149IPR001471AP2/ERF domain
CDDcd000185.64E-16145196No hitNo description
PRINTSPR003677.6E-12160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007022developmental stageseed imbibition stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCCAPKVANA EGRGPCRCCA GGEEDDEDGQ QPAAAWRMLS GYERSREASM MVDALATVVA  60
GGATPPATAG ARQQQVSPEG QWWSDYYAGD VTPPPSLPAP AAHEHGAARI PATAASPSSS  120
SQPPSPSSTG SGTPRRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFDTA EAAARAYDVA  180
ALRFRGSRAK LNFPESATLA APPSAAAVPP PPSPPPQRPE ALLESQALAL AGGQEYSEYA  240
RFLQCPADPP RLYDQAPAAT VPSAASGSAS SSFPVLFRFG GGGESSGVAS SQWWTQGSRS  300
VSQEGAGSPP ASWADSAWWP APPRDPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22136194463ATERF1
3gcc_A1e-22136194463ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G076896
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G076896_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546640.0EU954664.1 Zea mays clone 1475648 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354080.10.0uncharacterized protein LOC100280929
TrEMBLK7UPP40.0K7UPP4_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G076896_P011e-163(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-17related to AP2 6