PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G076896_P01
Common NameLOC100280929, ZEAMMB73_603279
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 329aa    MW: 34299.9 Da    PI: 7.3048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G076896_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20138187255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  GRMZM2G076896_P01 138 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDVAALRFRG 187
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.3E-14138187IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-23138197IPR016177DNA-binding domain
SMARTSM003809.4E-38138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-33138197IPR001471AP2/ERF domain
PROSITE profilePS5103226.134138195IPR001471AP2/ERF domain
PRINTSPR003677.6E-12139150IPR001471AP2/ERF domain
CDDcd000185.78E-16146197No hitNo description
PRINTSPR003677.6E-12161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MCCAPKVANA EGRGPCRCCA GGEEDDEDGQ QPAAAWRMLS GYERSREASM MVDALATVVA  60
GGATPPATAG ARQQQVSPEG QWWSDYYAGD VTPPPSLPAP AAHAEHGAAR IPATAASPSS  120
SSQPPSPSST GSGTPRRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT AEAAARAYDV  180
AALRFRGSRA KLNFPESATL AAPPSAAAVP PPPSPPPQRP EALLESQALA LAGGQEYSEY  240
ARFLQCPADP PRLYDQAPAA TVPSAASGSA SSSFPVLFRF GGGGESSGVA SSQWWTQGSR  300
SVSQEGAGSP PASWADSAWW PAPPRDPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22137195463ATERF1
3gcc_A2e-22137195463ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G076896
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G076896_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546640.0EU954664.1 Zea mays clone 1475648 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354080.11e-165uncharacterized protein LOC100280929
TrEMBLK7U9C70.0K7U9C7_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G076896_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-17ethylene response factor 110