PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G076657_P02
Common Namepco138672, WRKY58
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 477aa    MW: 50689.7 Da    PI: 7.0696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G076657_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.79e-32228284259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  GRMZM2G076657_P02 228 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 284
                        8**************************************99.***************8 PP
2WRKY104.94.3e-33384442159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+ +prsYY+Ct+agC+v+k++er+++dp++v++tYeg+H+he
  GRMZM2G076657_P02 384 LDDGYRWRKYGQKVVKGNSHPRSYYKCTFAGCNVRKHIERASSDPRAVITTYEGKHDHE 442
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28224286IPR003657WRKY domain
SuperFamilySSF1182902.35E-25226286IPR003657WRKY domain
SMARTSM007742.5E-34227285IPR003657WRKY domain
PROSITE profilePS5081123.192228286IPR003657WRKY domain
PfamPF031061.4E-24228284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-35370444IPR003657WRKY domain
SuperFamilySSF1182901.57E-28376444IPR003657WRKY domain
PROSITE profilePS5081135.783379444IPR003657WRKY domain
SMARTSM007743.7E-38384443IPR003657WRKY domain
PfamPF031064.5E-25385441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRST AESLFTGAGD ASPGPLTLAS ALFPSDADGG GGPGGASSSA  60
AGAATFTQLL TGSLAPPPQQ QQHEAQTGGG GVARAGPALS VAPPASSFAG ASLFTVPPGL  120
SPSGLLDSPG LLFSPAMGGF GMSHQQALAQ VTAQATHSPL RMFDHLEQPS FSTAATTSGA  180
LHHMNSAASM AGISDMTMAT ANNENPSFQS AEASQRYQVN APVDKPADDG YNWRKYGQKV  240
VKGSDCPRSY YKCTHPNCPV KKKVEHAEDG QISEIIYKGK HNHQRPPNKR AKDGNSSAFD  300
QNEQSNDTTS GLSGAKRDQD NIYGMSEQAY GLSDGDDMDD GESRPHEVDD ADNESKRRNI  360
QISSQRTLSE SKIIVQTTSE VDLLDDGYRW RKYGQKVVKG NSHPRSYYKC TFAGCNVRKH  420
IERASSDPRA VITTYEGKHD HEPPVGRGNN QNAGIPQQKE GQNNISSNQA SLFEARF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36218444877Probable WRKY transcription factor 4
2lex_A2e-36218444877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G076657
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G076657_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278270.0KJ727827.1 Zea mays clone pUT5780 WRKY transcription factor (WRKY58) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.20.0uncharacterized protein LOC100281507
TrEMBLA0A060D6R50.0A0A060D6R5_MAIZE; WRKY transcription factor (Fragment)
STRINGGRMZM2G076657_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-91WRKY DNA-binding protein 3