PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G076636_P02
Common Namecl6102_1a, ZEAMMB73_729450
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 611aa    MW: 66406.8 Da    PI: 7.3115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G076636_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12457503455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GRMZM2G076636_P02 457 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 503
                        799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-5160245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.70E-15456507No hitNo description
SuperFamilySSF474596.15E-19456520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10457503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-18457516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MVMKMEHEDN GAIGGTDGTW TEDDRALGAA VLGADAFAYL TKGGGAISEG LVATSLPGDL  60
QNKLQELVES ESPGTSWNYA IFWQLSRTKS GDLVLGWGDG CCREPRDGEL GAAASAGSED  120
SKQRMRKRAL QRLHIAFGVA DEEDYSPGID QVTDTEMFFL ASMYFAFPRH AGGPGQAFAA  180
GIPIWVPNSE RKVVPANYCY RGFLANAAGF RTIVLVPFES GVLELGSTQH IAESSGTVQT  240
VRSVFAGTSG NKSAVQRHEA ERSPGLAKIF GKDLNLGRPS VGLAVGVSNS KVDERTWEQR  300
SAVGGTSLLP SVQKGLQNFS WSQARGLNSH QQKFGNGVLI VSNNEGAHRN NGAVDSPSAA  360
QFQLQKAPQL QKLSVVQKTP QLVNQQPMQA QVPRQIDFSA GSSSKPGVLV TRAGVLDGES  420
AEVDGLCKEE GPPPVMEDRR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV  480
PNISKMDKAS LLGDAITYIT DLQKKLKEME TERERLLESG MVDPRERAPR PEVDIQVVQD  540
EVLVRVMSPM ENHPVKKVFQ AFEEAEVRVG ESKVTSNNNG TAVHSFIIKC PGTEQQTREK  600
VIAAMSRAMS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-28451513264Transcription factor MYC2
5gnj_B6e-28451513264Transcription factor MYC2
5gnj_E6e-28451513264Transcription factor MYC2
5gnj_F6e-28451513264Transcription factor MYC2
5gnj_G6e-28451513264Transcription factor MYC2
5gnj_I6e-28451513264Transcription factor MYC2
5gnj_M6e-28451513264Transcription factor MYC2
5gnj_N6e-28451513264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438446RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.254630.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G076636
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G076636_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539680.0BT053968.1 Zea mays full-length cDNA clone ZM_BFc0083E19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145780.20.0uncharacterized protein LOC100279287
RefseqXP_020397645.10.0uncharacterized protein LOC100279287 isoform X1
RefseqXP_020397646.10.0uncharacterized protein LOC100279287 isoform X1
TrEMBLK7VBN70.0K7VBN7_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G076636_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-131bHLH family protein