PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G076272_P04
Common NameLOC100274028, ZEAMMB73_643457
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 474aa    MW: 50752.8 Da    PI: 7.7988
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G076272_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.2e-094134511854
                        HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +Fe+   +yp  +e+e LA++ gL+ +qV++WF N R +
  GRMZM2G076272_P04 413 MFENflRPYPRDKEKEMLAARSGLSRSQVSNWFINARVR 451
                        57766689*****************************88 PP
2BELL218.2e-08283348972
               BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeava..glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        k+   +ll+ +d+r kq+ +++q  +s +   +  g g  ++ t +A++a+S  +r L+ +i++ i
  GRMZM2G076272_P04 283 KNDFQKLLQIMDQRCKQCLDEIQNAASKYGSLVrpGGGGGALSTLFAQRAVSATHRRLRARITGEI 348
                        555667899999*****************9987567778899********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075267.9E-15219345IPR006563POX domain
PROSITE profilePS5007112.05392455IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-26394468IPR009057Homeodomain-like
CDDcd000862.57E-12395456No hitNo description
SuperFamilySSF466896.42E-16395464IPR009057Homeodomain-like
SMARTSM003891.2E-7395459IPR001356Homeobox domain
PfamPF059201.1E-15412451IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MRSCFASGDG SVISSADAPF FHVPEYTLHG GGGFGFGEPA ADVAASSFLA DGSVLLAGQL  60
LRATALQSVS PEERHGAYYG VTGGSSSYGP SPWDVTVAHA PSRMTKQPVA GEPEGGWIHE  120
SSYYCPATWF SGDGFRDPFA GAAASELSLR LRAGSSPTAG AASVSLPDQS SEVSCSGLTH  180
WSSGGGPGMF QLPCGGAGQV AVAARPGPMH FSQVLSRWSG YADVTQQVLD EFVIRLLQDV  240
AGFAGGGEAS CPLPSSSYCS KTTSSNPNPS VFVSSEEHHN ELKNDFQKLL QIMDQRCKQC  300
LDEIQNAASK YGSLVRPGGG GGALSTLFAQ RAVSATHRRL RARITGEIAA ATRGGNQPSS  360
SSSLSLADRE RSWESAFIQK HWALRQLRRG DQQSWRPQRG LPEKSVAVLK AWMFENFLRP  420
YPRDKEKEML AARSGLSRSQ VSNWFINARV RLWKPMIEEM YEDLKKASAG IMEA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G076272
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G076272_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837550.0BT083755.1 Zea mays full-length cDNA clone ZM_BFb0035M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334628.10.0uncharacterized protein LOC100274028 isoform 1
RefseqXP_008658300.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
RefseqXP_008658301.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
RefseqXP_008658302.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
RefseqXP_020399149.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
TrEMBLC4IYV80.0C4IYV8_MAIZE; Homeobox protein ATH1
STRINGGRMZM2G076272_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-50homeobox gene 1