PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G076272_P01
Common NameLOC100274028, ZEAMMB73_643457
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 491aa    MW: 52469.6 Da    PI: 7.566
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G076272_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.4e-094304681854
                        HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +Fe+   +yp  +e+e LA++ gL+ +qV++WF N R +
  GRMZM2G076272_P01 430 MFENflRPYPRDKEKEMLAARSGLSRSQVSNWFINARVR 468
                        57766689*****************************88 PP
2BELL20.98.7e-08300365972
               BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeava..glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        k+   +ll+ +d+r kq+ +++q  +s +   +  g g  ++ t +A++a+S  +r L+ +i++ i
  GRMZM2G076272_P01 300 KNDFQKLLQIMDQRCKQCLDEIQNAASKYGSLVrpGGGGGALSTLFAQRAVSATHRRLRARITGEI 365
                        555667899999*****************9987567778899********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075268.4E-15236362IPR006563POX domain
PROSITE profilePS5007112.05409472IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-25411485IPR009057Homeodomain-like
SuperFamilySSF466896.84E-16412481IPR009057Homeodomain-like
SMARTSM003891.2E-7412476IPR001356Homeobox domain
CDDcd000862.77E-12412473No hitNo description
PfamPF059201.1E-15429468IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MTGNASYQHL GLGVDATMRS CFASGDGSVI SSADAPFFHV PEYTLHGGGG FGFGEPAADV  60
AASSFLADGS VLLAGQLLRA TALQSVSPEE RHGAYYGVTG GSSSYGPSPW DVTVAHAPSR  120
MTKQPVAGEP EGGWIHESSY YCPATWFSGD GFRDPFAGAA ASELSLRLRA GSSPTAGAAS  180
VSLPDQSSEV SCSGLTHWSS GGGPGMFQLP CGGAGQVAVA ARPGPMHFSQ VLSRWSGYAD  240
VTQQVLDEFV IRLLQDVAGF AGGGEASCPL PSSSYCSKTT SSNPNPSVFV SSEEHHNELK  300
NDFQKLLQIM DQRCKQCLDE IQNAASKYGS LVRPGGGGGA LSTLFAQRAV SATHRRLRAR  360
ITGEIAAATR GGNQPSSSSS LSLADRERSW ESAFIQKHWA LRQLRRGDQQ SWRPQRGLPE  420
KSVAVLKAWM FENFLRPYPR DKEKEMLAAR SGLSRSQVSN WFINARVRLW KPMIEEMYED  480
LKKASAGIME A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.760310.0ear| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G076272
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G076272_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837550.0BT083755.1 Zea mays full-length cDNA clone ZM_BFb0035M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334628.10.0uncharacterized protein LOC100274028 isoform 1
RefseqXP_008658300.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
RefseqXP_008658301.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
RefseqXP_008658302.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
RefseqXP_020399149.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
TrEMBLC4IYV80.0C4IYV8_MAIZE; Homeobox protein ATH1
STRINGGRMZM2G076272_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-50homeobox gene 1