PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G075956_P02
Common NameZEAMMB73_051111, Zm.2957
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 519aa    MW: 57097 Da    PI: 5.8957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G075956_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06279300223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C +Cgk F+r  nL+ H+r H
  GRMZM2G075956_P02 279 FCLICGKGFKRDANLRMHMRGH 300
                        5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-5276303No hitNo description
PROSITE profilePS5015711.552278305IPR007087Zinc finger, C2H2
SMARTSM003550.012278300IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.3E-5280304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
SMARTSM0035571327360IPR015880Zinc finger, C2H2-like
SMARTSM0035522365387IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEGRMTSLEA TMKVSSSMAS SISRNADPDQ QTLRPNSVEQ FYFPRPGQSL PGIPPFFGPP  60
SSSLYLPNDN EAKFGNQFES NPSQNTDWDP QAIVSNLTFL EQKIKQVKDI VQSMSNRENQ  120
LAGGSSELAA KQHLVTADLT SIIIQLISTA GSLLPSMKNP LLSSNPAVRQ LGNTLGSPMG  180
LGMNANQRPS VDSKTDIPDT GKTSDYDELM NSLNPAQDER DEMIKCPNPC GGEGSEPTPM  240
EDHDVKESDD GGEGENLPPG SYVVLQLEKE EILAPHTHFC LICGKGFKRD ANLRMHMRGH  300
GDEYKTPAAL AKPTKDSGAD HAPVTRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH  360
CDKSYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH VALFQGHTPA  420
LPMEDVKVSE ASEQPQDSEP MNEMARSNMY SFPCSSSDGI SNLDMKMADD VRGYFSPLNF  480
DPCFGALDDF TRPGFDISEN PFSFLPSGSC SYGQQNGDS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.29570.0ear| embryo| endosperm| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G075956
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G075956_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607280.0BT060728.1 Zea mays full-length cDNA clone ZM_BFb0039M21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149728.20.0uncharacterized protein LOC100283355
RefseqXP_020397739.10.0uncharacterized LOC100283355 isoform X1
RefseqXP_020397740.10.0uncharacterized LOC100283355 isoform X1
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLC0HEH20.0C0HEH2_MAIZE; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGGRMZM2G075956_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-155C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]