PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G075562_P01
Common NameCOL5, LOC100304421
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 407aa    MW: 44477.3 Da    PI: 5.0983
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G075562_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.6e-07445540
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        C+ +++++  ++C+++   lC +C  + H+       Ht++
  GRMZM2G075562_P01  4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                       7*****************************657888889876 PP
2zf-B_box27.94.7e-094788540
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        C+++++++++  C +++  lC++C  ++H        H+++
  GRMZM2G075562_P01 47 LCDRCGSQPASVRCLEDNASLCQNCDWNGHDAesgasgHKRQ 88
                       7*****************************446778888876 PP
3CCT62.51.3e-21350393144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ 
  GRMZM2G075562_P01 350 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 393
                        899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
SMARTSM003361.6E-10147IPR000315B-box-type zinc finger
CDDcd000212.82E-6447No hitNo description
PROSITE profilePS501199.6134390IPR000315B-box-type zinc finger
PfamPF006435.2E-64788IPR000315B-box-type zinc finger
CDDcd000213.09E-84790No hitNo description
SMARTSM003360.00514890IPR000315B-box-type zinc finger
PfamPF062031.1E-16350392IPR010402CCT domain
PROSITE profilePS5101715.368350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MASLCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPASVRC  60
LEDNASLCQN CDWNGHDAES GASGHKRQAI NCYSGCPSSA ELSRIWSFIT DIPTVAAEPD  120
YEDGLSMMTI DGSDVTNRHD TSDDKRLLEI ANTTLMSDPP SADKLKSPTG SSSGDGFDVM  180
TLATDQPAGP VSATPKVPNA RDDDKFNDGM YEDLCVDDAD LTFEDYEELF GTSHIRTEEL  240
FDDAGIDGYF ELKETPPFYF NEQPKAMQIE CGNVVSADCA MSNPGARADS SLCIPVRQVR  300
SSISHSLSGL TGESSAGDHH DCGVSPMLLM GEPPWHSPGG PEGSVAGGSR DSALTRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFI KAGEAYDYDP LSQTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.182500.0aerial organ| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G075562
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G075562_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611160.0BT061116.1 Zea mays full-length cDNA clone ZM_BFb0107F18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159328.10.0uncharacterized protein LOC100304421
RefseqXP_008643907.10.0uncharacterized protein LOC100304421 isoform X1
TrEMBLA0A3L6EL820.0A0A3L6EL82_MAIZE; Zinc finger protein CONSTANS-LIKE 9
TrEMBLC0HFL00.0C0HFL0_MAIZE; C2C2-CO-like transcription factor
STRINGGRMZM2G075562_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Representative plantOGRP13751334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.42e-91CONSTANS-like 9