PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G075122_P01 | ||||||||
Common Name | IDP157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 189aa MW: 20587.8 Da PI: 7.6788 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 113 | 1.9e-35 | 79 | 178 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg ++f+++h+q if GRMZM2G075122_P01 79 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFTFRSPHEQAIF 170 79************************99877778***************************************8999*************** PP DUF573 90 elskkiWg 97 e+++ iW+ GRMZM2G075122_P01 171 EIARNIWR 178 *******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-31 | 80 | 177 | IPR007592 | Protein of unknown function DUF573 |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
MPPTGDDPSA AAGISFPDAG GGGDSEDGDF AGSHLLDPTD PGLPNPTTSS ATGLPHAIPA 60 AGSGGGPVTS GNGGERRPLF QRLWTEEDEI VILRGFAEFT AARGTAFASH QYDTDPFYED 120 MRRRLQLDFS KSQLVEKLRR LKRKYRNCVS RLRESGATFT FRSPHEQAIF EIARNIWRPA 180 KQTRPRSLG |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.83623 | 0.0 | meristem| pollen| silk |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G075122 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G075122_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT034143 | 0.0 | BT034143.1 Zea mays full-length cDNA clone ZM_BFc0032C15 mRNA, complete cds. | |||
GenBank | JX428518 | 0.0 | JX428518.1 Zea mays subsp. mays clone pUT3117 GBP6 GeBP type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130793.1 | 1e-129 | uncharacterized protein LOC100191897 | ||||
Swissprot | Q9CAV7 | 4e-34 | STKLJ_ARATH; Probable transcription factor At3g04930 | ||||
TrEMBL | A0A3L6FVK3 | 1e-127 | A0A3L6FVK3_MAIZE; Putative transcription factor | ||||
TrEMBL | B4FAK5 | 1e-127 | B4FAK5_MAIZE; Putative transcription factor | ||||
TrEMBL | K0D9S5 | 1e-127 | K0D9S5_MAIZE; GBP6 GeBP type transcription factor (Fragment) | ||||
STRING | GRMZM2G075122_P02 | 1e-128 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04930.2 | 5e-36 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G075122_P01 |