PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G075064_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 328aa    MW: 36851.7 Da    PI: 6.7696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G075064_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34e-092871146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       + ++ +eE+e+ ++ +  +G++ W+  a++++ gRt +++k++w++
  GRMZM2G075064_P01 28 KEPFNAEEEEKTIKFHIWWGSK-WAMMASHLP-GRTYNEIKNYWNT 71
                       57899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-5934IPR009057Homeodomain-like
SuperFamilySSF466895.34E-121076IPR009057Homeodomain-like
PROSITE profilePS5129417.2282377IPR017930Myb domain
SMARTSM007172.7E-72775IPR001005SANT/Myb domain
PfamPF002497.1E-72871IPR001005SANT/Myb domain
CDDcd001671.03E-63071No hitNo description
Gene3DG3DSA:1.10.10.605.7E-153572IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVQQNVRLNR CGKRCCRWTN HLRPNLKKEP FNAEEEEKTI KFHIWWGSKW AMMASHLPGR  60
TYNEIKNYWN TRNRRKQGCG SPLHLEYMLS QVSHKDMDCE IPRESHGKKR SNECSKENVA  120
DVQELVDELI VFEHLDYGKD IMFPTRPLKH HASTGSVQIP GDIGKTLNYV MTKNQSMPVG  180
SAIGSGYPVY GGKLSTLGTI FSSIQTEIPS IQSSSYSISN DWVAQCPSAC IEQWIPMECN  240
IISQSNAYLM MHSSSAFCAP EHEGCSETQA PNLCSGSDVV FDPSQCYPVA SFSDLGIPDT  300
PLIAGFLNDI ALVSLLNDNL KDQSHLNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-13107637104MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-13107637104C-Myb DNA-Binding Domain
1msf_C3e-13107637104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.809390.0aerial organ| cell culture| embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G075064
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G075064_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419360.0BT041936.1 Zea mays full-length cDNA clone ZM_BFb0083A23 mRNA, complete cds.
GenBankKJ7268990.0KJ726899.1 Zea mays clone pUT3444 MYB transcription factor (MYB59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141727.10.0uncharacterized LOC100273858
RefseqXP_008647571.10.0uncharacterized protein LOC100273858 isoform X1
TrEMBLA0A1D6LS940.0A0A1D6LS94_MAIZE; Transcription factor MYB104
STRINGGRMZM2G075064_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Representative plantOGRP1067739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.13e-28myb domain protein 65