PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G074543_P01 | ||||||||
Common Name | Zm.11824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 109aa MW: 11977.7 Da PI: 7.8411 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 75.4 | 1.8e-23 | 25 | 61 | 134 | 170 |
YABBY 134 keeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++eiqrika+nP+ishreafsaaaknWahfP+ihfgl GRMZM2G074543_P01 25 RDEIQRIKAGNPNISHREAFSAAAKNWAHFPHIHFGL 61 78*********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-21 | 25 | 61 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 109 aa Download sequence Send to blast |
MHRSDVSLLL FFFLLALSLG EYDCRDEIQR IKAGNPNISH REAFSAAAKN WAHFPHIHFG 60 LMPDHQGLKT TSLLPQDHQR KDGLLKEGLY AAAAAAAAHA AANMGIAPY |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G074543 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G074543_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY313903 | 1e-141 | AY313903.1 Zea mays yabby9 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105231.1 | 5e-55 | yabby 9 | ||||
Swissprot | Q8L556 | 6e-44 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | A0A1D6GNF3 | 9e-54 | A0A1D6GNF3_MAIZE; Yabby9 protein | ||||
TrEMBL | Q7X9M7 | 1e-53 | Q7X9M7_MAIZE; Yabby9 protein | ||||
STRING | GRMZM2G074543_P04 | 7e-54 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-29 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G074543_P01 |
Publications ? help Back to Top | |||
---|---|---|---|
|