PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G074358_P01

Common Name

LOC100501680

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

NAC

Protein Properties

Length: 326aa MW: 36590.4 Da PI: 6.7984

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G074358_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.5	2e-43	8	142	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya........tgkrknratksgyWkat 86 pGfrFhPt+eel+ +yLk+ ++g+kl++ ++i++v++y+++Pw+Lp ++ +e+ewyfF++rd + +g r++r+t++g+Wkat GRMZM2G074358_P01 8 PGFRFHPTEEELLEFYLKQVAHGRKLKF-DIIPTVHLYRHDPWELPGLARIGEREWYFFVPRDGGRPakqhhhqsSGARPSRTTERGFWKAT 98 9************************9.99***********8778899***998766644444444567********** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++v ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl GRMZM2G074358_P01 99 GSDRAVRCAhdPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 142 **998666778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.204	6	187	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-50	7	187	IPR003441	NAC domain
Pfam	PF02365	1.9E-23	8	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAEQLDLPGF RFHPTEEELL EFYLKQVAHG RKLKFDIIPT VHLYRHDPWE LPGLARIGER 60 EWYFFVPRDG GRPAKQHHHQ SSGARPSRTT ERGFWKATGS DRAVRCAHDP KRLIGLKKTL 120 VYYEGRAPRG TKTDWVMNEY RLPDACNNNN NNNNTVAGDS SAAAAASSTT TNNSPKEDIV 180 LCKVYRKAVS LKELEQRVAM EELARATPSA SHNAGSPADS MSSSDQDQQT QLGQGGVEIM 240 ITMPVGGISP PPPLPPPVMM SMKQEEEVAE PEAPLPAVLM RPSTLSLPQL EVAKQQQEWM 300 QDPFLTQLRS PWMESWSPYY PSVLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-40	8	142	17	140	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G074358

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G074358_P01

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085943	0.0	BT085943.1 Zea mays full-length cDNA clone ZM_BFc0087P13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001183286.1	0.0	uncharacterized protein LOC100501680
Swissprot	Q10S65	1e-92	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	C4J546	0.0	C4J546_MAIZE; NAC domain containing protein 36
TrEMBL	K0DG38	0.0	K0DG38_MAIZE; NAC42 NAC type transcription factor (Fragment)
STRING	GRMZM2G074358_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-75	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	GRMZM2G074358_P01
Entrez Gene	100501680

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]