PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G074124_P05 | ||||||||
Common Name | IDP681, YAB6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21659.6 Da PI: 7.8159 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 235.4 | 1.3e-72 | 8 | 166 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 + +e+vCyv+CnfCntilavsvPs s++++vtvrCGhCtsllsvnl+ q l++++h +++e+ v+++ +++n+ ++ + + GRMZM2G074124_P05 8 IAPVPEHVCYVHCNFCNTILAVSVPSHSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNH----HYSQQQENFTVQNMGFTENYPEYAPSYR 95 56789******************************************************9....5566788999999999999988877666 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + + +++ + +r PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl GRMZM2G074124_P05 96 MPTT-LSAKGDLDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKACNPDISHREAFSTAAKNWAHFPNIHFGL 166 5554.324555566665....899**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.8E-70 | 12 | 166 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.33E-8 | 111 | 160 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.7E-5 | 112 | 160 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSSAPLQIAP VPEHVCYVHC NFCNTILAVS VPSHSMLNIV TVRCGHCTSL LSVNLRGLIQ 60 SLPVQNHHYS QQQENFTVQN MGFTENYPEY APSYRMPTTL SAKGDLDHML HVRAPEKRQR 120 VPSAYNRFIK EEIRRIKACN PDISHREAFS TAAKNWAHFP NIHFGLGPCE SSNNLDEATG 180 AMCHPQKVQD LY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.8827 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G074124 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G074124_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042010 | 0.0 | BT042010.1 Zea mays full-length cDNA clone ZM_BFb0106K19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141765.1 | 1e-144 | uncharacterized protein LOC100273901 | ||||
Swissprot | Q10FZ7 | 6e-96 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | B4FY22 | 1e-143 | B4FY22_MAIZE; C2C2-YABBY transcription factor | ||||
STRING | GRMZM2G074124_P04 | 1e-144 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-58 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G074124_P05 |
Entrez Gene | 100273901 |
Publications ? help Back to Top | |||
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