PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G074124_P02 | ||||||||
Common Name | IDP681, YAB6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | YABBY | ||||||||
Protein Properties | Length: 113aa MW: 12667.5 Da PI: 7.2162 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 103.6 | 4.1e-32 | 8 | 89 | 3 | 88 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 + +e+vCyv+CnfCntilavsvPs s++++vtvrCGhCtsllsvnl+ q l++++h + +e+ v+++ +++n+ + GRMZM2G074124_P02 8 IAPVPEHVCYVHCNFCNTILAVSVPSHSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNHHYSQQ----QENFTVQNMGFTENYPE 89 56789******************************************************944444....44444444444444433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.4E-29 | 12 | 79 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MSSAPLQIAP VPEHVCYVHC NFCNTILAVS VPSHSMLNIV TVRCGHCTSL LSVNLRGLIQ 60 SLPVQNHHYS QQQENFTVQN MGFTENYPEY APSYRMPTTL SAKGDLDHML HVR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.8827 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G074124 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G074124_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042010 | 0.0 | BT042010.1 Zea mays full-length cDNA clone ZM_BFb0106K19 mRNA, complete cds. | |||
GenBank | BT065661 | 0.0 | BT065661.1 Zea mays full-length cDNA clone ZM_BFc0008C02 mRNA, complete cds. | |||
GenBank | KJ726841 | 0.0 | KJ726841.1 Zea mays clone pUT3381 C2C2-YABBY transcription factor (YAB6) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141765.1 | 5e-79 | uncharacterized protein LOC100273901 | ||||
Refseq | XP_008644640.2 | 4e-79 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 3e-45 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A1D6GLC6 | 1e-78 | A0A1D6GLC6_MAIZE; C2C2-YABBY-transcription factor 6 | ||||
STRING | GRMZM2G074124_P04 | 2e-78 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-20 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G074124_P02 |
Entrez Gene | 100273901 |
Publications ? help Back to Top | |||
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