PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G074124_P01
Common NameIDP681
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 68aa    MW: 7702.78 Da    PI: 6.0503
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G074124_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY31.27.3e-10831326
              YABBY  3 vfssseqvCyvqCnfCntilavsv 26
                       +   +e+vCyv+CnfCntila + 
  GRMZM2G074124_P01  8 IAPVPEHVCYVHCNFCNTILAENF 31
                       66789***************9775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.0E-71232IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MSSAPLQIAP VPEHVCYVHC NFCNTILAEN FTVQNMGFTE NYPEYAPSYR MPTTLSAKGD  60
LDHMLHVR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.88275e-63ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G074124
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G074124_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420101e-60BT042010.1 Zea mays full-length cDNA clone ZM_BFb0106K19 mRNA, complete cds.
GenBankBT0656611e-60BT065661.1 Zea mays full-length cDNA clone ZM_BFc0008C02 mRNA, complete cds.
GenBankKJ7268411e-60KJ726841.1 Zea mays clone pUT3381 C2C2-YABBY transcription factor (YAB6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141765.14e-36uncharacterized protein LOC100273901
RefseqXP_008644640.22e-36protein YABBY 2
TrEMBLA0A1D6GLC69e-36A0A1D6GLC6_MAIZE; C2C2-YABBY-transcription factor 6
TrEMBLA0A1Q0ZI421e-35A0A1Q0ZI42_MAIZE; Putative axial regulator YABBY 2
STRINGGRMZM2G074124_P041e-35(Zea mays)