PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G074124_P01 | ||||||||
Common Name | IDP681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | YABBY | ||||||||
Protein Properties | Length: 68aa MW: 7702.78 Da PI: 6.0503 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 31.2 | 7.3e-10 | 8 | 31 | 3 | 26 |
YABBY 3 vfssseqvCyvqCnfCntilavsv 26 + +e+vCyv+CnfCntila + GRMZM2G074124_P01 8 IAPVPEHVCYVHCNFCNTILAENF 31 66789***************9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.0E-7 | 12 | 32 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MSSAPLQIAP VPEHVCYVHC NFCNTILAEN FTVQNMGFTE NYPEYAPSYR MPTTLSAKGD 60 LDHMLHVR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.8827 | 5e-63 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G074124 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G074124_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042010 | 1e-60 | BT042010.1 Zea mays full-length cDNA clone ZM_BFb0106K19 mRNA, complete cds. | |||
GenBank | BT065661 | 1e-60 | BT065661.1 Zea mays full-length cDNA clone ZM_BFc0008C02 mRNA, complete cds. | |||
GenBank | KJ726841 | 1e-60 | KJ726841.1 Zea mays clone pUT3381 C2C2-YABBY transcription factor (YAB6) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141765.1 | 4e-36 | uncharacterized protein LOC100273901 | ||||
Refseq | XP_008644640.2 | 2e-36 | protein YABBY 2 | ||||
TrEMBL | A0A1D6GLC6 | 9e-36 | A0A1D6GLC6_MAIZE; C2C2-YABBY-transcription factor 6 | ||||
TrEMBL | A0A1Q0ZI42 | 1e-35 | A0A1Q0ZI42_MAIZE; Putative axial regulator YABBY 2 | ||||
STRING | GRMZM2G074124_P04 | 1e-35 | (Zea mays) |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G074124_P01 |