PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G074032_P01 | ||||||||
Common Name | LOC103639380, ZEAMMB73_608286, Zm.130314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 448aa MW: 46826.8 Da PI: 9.9629 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.6e-07 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H GRMZM2G074032_P01 82 YVCEICGQGFQREQNLQMHRRRH 104 9*********************9 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 185 | 207 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ GRMZM2G074032_P01 185 WVCARCAKGYAVQSDYKAHLKTC 207 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 81 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.53E-7 | 81 | 104 | No hit | No description |
PROSITE profile | PS50157 | 11.759 | 82 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.5E-4 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 149 | 179 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.53E-7 | 180 | 205 | No hit | No description |
SMART | SM00355 | 270 | 185 | 212 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 448 aa Download sequence Send to blast |
MALLVKSHQQ MLVSSSTTSS SSPSSASQQR HPPPPPPPSS SCLTDQQQPS PAKRKRRPPG 60 TPDPDAEVVA LSPRTLLESD RYVCEICGQG FQREQNLQMH RRRHKVPWRL VKRAPPPAGG 120 GEDSAGANNS STAGTGVGGG GGGPRKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG 180 GRRQWVCARC AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSSRIRG 240 EAVAVAVPAP PSALPVIRPA VPRHQPTVAP APPPPELQLL PASAAASAPL ASTPTASLST 300 TTNASQEQEP HAAAAATTTT KLQLSIGPTV IAPGADAAAA TASAVGEEDD SEAKELRRAM 360 KEKAAADAAR ARARGEAAAA ERALDEARRA RQRARADLEK ACALRDHAAR LLAQVTCHAC 420 RQRSLAVAGG PAVACDSIIR GGGGEAGI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-16 | 181 | 235 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 1e-16 | 181 | 235 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G074032 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G074032_P01 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT087165 | 0.0 | BT087165.2 Zea mays full-length cDNA clone ZM_BFb0183A11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008660353.1 | 0.0 | protein indeterminate-domain 16 | ||||
Swissprot | F4IPE3 | 1e-112 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A3L6DEH2 | 0.0 | A0A3L6DEH2_MAIZE; Protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | K7VNU9 | 0.0 | K7VNU9_MAIZE; Protein SHOOT GRAVITROPISM 5 | ||||
STRING | GRMZM2G074032_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01940.1 | 3e-87 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G074032_P01 |
Entrez Gene | 103639380 |
Publications ? help Back to Top | |||
---|---|---|---|
|