PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G073836_P01
Common NameZm.29974
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 293aa    MW: 33376.6 Da    PI: 9.5324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G073836_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-1677120347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rW+ eEde l++ vk++G+++W+tIa  ++ gR +++c srw  +
  GRMZM2G073836_P01  77 RWSSEEDEALKQMVKKYGTKNWRTIACAIP-GRNANSCLSRWKYL 120
                        9*****************************.***********876 PP
2Myb_DNA-binding37.17.2e-12127169145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        + +W+++E+++l++a + +G++ W +  ++++ gRt   +k++w+
  GRMZM2G073836_P01 127 KEPWSQQEELRLIRAQQVYGNK-WCKMVKHFP-GRTNDALKEHWR 169
                        679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.2870125IPR017930Myb domain
SuperFamilySSF466892.84E-2774168IPR009057Homeodomain-like
SMARTSM007171.1E-1474123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2177130IPR009057Homeodomain-like
CDDcd001676.40E-1377121No hitNo description
PfamPF139211.8E-1578138No hitNo description
PROSITE profilePS5129415.067126176IPR017930Myb domain
SMARTSM007177.7E-11126174IPR001005SANT/Myb domain
CDDcd001671.74E-8129169No hitNo description
Gene3DG3DSA:1.10.10.603.2E-17131176IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEQSSDGLPI SQRRANSSTK HSSKSDEVAE DMLQSNIPHE TVRLCQGVES EEIEGPPHKK  60
IVQNFTESSS SKNKKHRWSS EEDEALKQMV KKYGTKNWRT IACAIPGRNA NSCLSRWKYL  120
LDPAINKEPW SQQEELRLIR AQQVYGNKWC KMVKHFPGRT NDALKEHWRS PMKRKLDSYL  180
ASGLLEHVPD LQDDVSFPQT QNNQSDIPKD CKAASDRNRF SSRLSTDPKL KQELTELDEN  240
GNTSARKSSD LFYAKAPDTH SAKISEMRMA KSQQCAGTRK KLAFLSTPVE LKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-257817810110B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.299740.0tassel
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO780258670.0
Expression AtlasGRMZM2G073836-
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G073836_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645503.10.0uncharacterized protein LOC103626929 isoform X1
RefseqXP_008645504.10.0uncharacterized protein LOC103626929 isoform X1
RefseqXP_008645505.10.0uncharacterized protein LOC103626929 isoform X1
RefseqXP_008645507.10.0uncharacterized protein LOC103626929 isoform X2
RefseqXP_020394056.10.0uncharacterized protein LOC103626929 isoform X2
TrEMBLA0A1D6H4Y90.0A0A1D6H4Y9_MAIZE; Myb-related protein 3R-1
TrEMBLA0A1D6H4Z30.0A0A1D6H4Z3_MAIZE; Myb-related protein 3R-1
STRINGGRMZM2G073836_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Representative plantOGRP1295045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-39myb domain protein 3r-4