PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G073805_P01
Common NameLOC100383117, ZEAMMB73_164904
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 666aa    MW: 73486.5 Da    PI: 5.5435
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G073805_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.12.5e-952856631373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cA+av++g+   a  lL +++ ++sp+gd++qRla++f+ +L+arla+++++   a + +     + +e l a++l+  ++ +  
  GRMZM2G073805_P01 285 LRTLLIHCAQAVAAGNRPSAADLLGKIRARSSPRGDATQRLAHCFAGGLEARLAGTGTQQLTAATKR----ASAVEILRAYQLYLAACSFTA 372
                        6789***************************************************554444333333....3479***************** PP

               GRAS  93 fshltaNqaIleavege..ervHiiDf.disqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                        +++   N aI +av g   ++vHi+D+ d  +G+QWp+Ll    s ++gpp++RiT+++ pe+g     +l++tg+rL+ fA++ gvp++f+
  GRMZM2G073805_P01 373 MAYKFSNLAICKAVGGGgrKKVHIVDYgDHYYGFQWPSLLGYWGSLEAGPPEVRITAIDFPEPGfrPDARLQATGRRLTCFARRHGVPLRFH 464
                        **************988779*******56789*******************************9999************************* PP

               GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          ++ r+++++++eL+++++E+l+Vn  ++l r+ +++++  +      +rd+vL  v++++P+v+v++ ++++++++ F++rf eal yys
  GRMZM2G073805_P01 465 G-IEARWDAVSVDELSIERDEVLVVNGLFSLGRMQEQEQDDVDrdsrpsPRDTVLGNVRKMRPDVFVLCVENSSYGAPLFVTRFREALFYYS 555
                        *.799****************************99665544333335559****************************************** PP

               GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                        alfd+++a ++r++++r+ vE++l+g+++ n++aceg++r+er et+++W+ r e+aG++++pl+ +a+  +++ ++  + +   ++e++++
  GRMZM2G073805_P01 556 ALFDMMDAVAARDDDDRVLVEQHLFGQRALNAIACEGSDRVERPETYRQWQVRNERAGLRQLPLDPDAVRAIRRKVKDKYHRDLFIDEDQQW 647
                        ******************************************************************************998889******** PP

               GRAS 358 lvlgWkdrpLvsvSaW 373
                        l++gWk+r L+++SaW
  GRMZM2G073805_P01 648 LLQGWKGRVLYAMSAW 663
                        **************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.348259644IPR005202Transcription factor GRAS
PfamPF035148.8E-93285663IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAAEPADVGD SEPEPFSPSD FLNLGPPTPR LDSPALQLHD DDDDLVLLFI SRMLMEEETD  60
GFFEQYHPDH PALLQAQQPF ADILAGAAAA DGSRGTSVAG SPAFAANAIW PYDPVQLSQL  120
LLSRTYPADT AAYPSAAADS MASSAGSGAG TVNMDMLNLA FLKGMEEASK FLPATSNNHD  180
HRRQATETCD KRVDESSPLL QQSASKGRKN HRHAPYWGED EEAETGRRSC KVMAVETEES  240
EMVEEFVQSG YDSLHEQMMA MTLSTAGSRK GKGKGKGSAN EAVDLRTLLI HCAQAVAAGN  300
RPSAADLLGK IRARSSPRGD ATQRLAHCFA GGLEARLAGT GTQQLTAATK RASAVEILRA  360
YQLYLAACSF TAMAYKFSNL AICKAVGGGG RKKVHIVDYG DHYYGFQWPS LLGYWGSLEA  420
GPPEVRITAI DFPEPGFRPD ARLQATGRRL TCFARRHGVP LRFHGIEARW DAVSVDELSI  480
ERDEVLVVNG LFSLGRMQEQ EQDDVDRDSR PSPRDTVLGN VRKMRPDVFV LCVENSSYGA  540
PLFVTRFREA LFYYSALFDM MDAVAARDDD DRVLVEQHLF GQRALNAIAC EGSDRVERPE  600
TYRQWQVRNE RAGLRQLPLD PDAVRAIRRK VKDKYHRDLF IDEDQQWLLQ GWKGRVLYAM  660
SAWAAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-392896638374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1376100.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G073805
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G073805_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0662250.0BT066225.1 Zea mays full-length cDNA clone ZM_BFc0105K21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169255.10.0uncharacterized protein LOC100383117
TrEMBLC0PD560.0C0PD56_MAIZE; Uncharacterized protein
STRINGGRMZM2G073805_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5795422
Representative plantOGRP1981322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-114GRAS family protein