PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G073750_P03 | ||||||||
Common Name | AY110827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 781aa MW: 86051.6 Da PI: 6.7491 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74 | 1.8e-23 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ ++++ + +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F GRMZM2G073750_P03 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQHPPVQ--ELVARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI-- 216 99*****************************86666655..8************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ GRMZM2G073750_P03 217 WNDNNQLLLGIRRA 230 7777778***9997 PP | |||||||
2 | Auxin_resp | 115.2 | 5.9e-38 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+ rWpnS+Wrs+k GRMZM2G073750_P03 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITCISDLDSERWPNSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-47 | 117 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-41 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-21 | 128 | 229 | No hit | No description |
Pfam | PF02362 | 1.6E-21 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-25 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.506 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-33 | 255 | 338 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 781 aa Download sequence Send to blast |
MNLSPPRMSE PSLESDGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN 60 KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETGEVYAQMT LQPLSPEEQK EPFLPIELGA 120 GSNQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQHPPVQELV ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS 240 VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITC ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP 360 LMAFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGNRGA QSLNFQGLGA 420 SPWLQPRIDY PLLGLKLDTY QQMAAAALEE IRAGDHLKQI SSLLPVQQPQ NLSGGLDPLY 480 GNPVLQQMQF QSQQSSLQVV QQGYGPNASD SGFLQNQLQL QKQQEPLPQQ QQQALQQQSH 540 QEMQHHLSAS CHDIANVASG VSESGSASQT ESSLLSGSSY QQIYDGNSGP GLHLHNGFHN 600 CSSQESSNLL NLSRSGQFMA SEGWPLKRLA VESLSGHELQ PVQHKFEKVN HQSNVSHISS 660 TLPPLSARDS YSAQASGTND QSHLLSSSFA IHDGLTAVRS GGVGSGTDAI TIASLRYNDM 720 NLLPENPIAT SSCLGESGTF NSLDDVCGVN PSQGGTFVKV CNLTYAVCSL FIKWHVKLPS 780 W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 14 | 359 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.79067 | 0.0 | cell culture| ear| embryo| endosperm| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G073750 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G073750_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055015 | 0.0 | BT055015.1 Zea mays full-length cDNA clone ZM_BFb0167O20 mRNA, complete cds. | |||
GenBank | JX428509 | 0.0 | JX428509.1 Zea mays subsp. mays clone pUT3107 ARF9 ARF type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146279.1 | 0.0 | uncharacterized LOC100279854 | ||||
Swissprot | Q2QM84 | 0.0 | ARFY_ORYSJ; Auxin response factor 25 | ||||
TrEMBL | A0A1D6MWL0 | 0.0 | A0A1D6MWL0_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G073750_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G073750_P03 |
Publications ? help Back to Top | |||
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