PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G073750_P01
Common NameAY110827
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 888aa    MW: 97844.6 Da    PI: 6.0782
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G073750_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.1e-23129230199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F   
  GRMZM2G073750_P01 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQHPPVQ--ELVARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI-- 216
                        99*****************************86666655..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  GRMZM2G073750_P01 217 WNDNNQLLLGIRRA 230
                        7777778***9997 PP
2Auxin_resp114.97e-38255338183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+ rWpnS+Wrs+k
  GRMZM2G073750_P01 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITCISDLDSERWPNSHWRSVK 338
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-47117258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-41122244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-21128229No hitNo description
PfamPF023621.9E-21129230IPR003340B3 DNA binding domain
SMARTSM010196.4E-25129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506129231IPR003340B3 DNA binding domain
PfamPF065072.9E-33255338IPR010525Auxin response factor
PfamPF023094.9E-8752840IPR033389AUX/IAA domain
SuperFamilySSF542779.16E-7754830No hitNo description
PROSITE profilePS5174523.882755839IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MNLSPPRMSE PSLESDGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN  60
KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETGEVYAQMT LQPLSPEEQK EPFLPIELGA  120
GSNQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQHPPVQELV ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITC ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP  360
LMAFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGNRGA QSLNFQGLGA  420
SPWLQPRIDY PLLGLKLDTY QQMAAAALEE IRAGDHLKQI SSLLPVQQPQ NLSGGLDPLY  480
GNPVLQQMQF QSQQSSLQVV QQGYGPNASD SGFLQNQLQL QKQQEPLPQQ QQQALQQQSH  540
QEMQHHLSAS CHDIANVASG VSESGSASQT ESSLLSGSSY QQIYDGNSGP GLHLHNGFHN  600
CSSQESSNLL NLSRSGQFMA SEGWPLKRLA VESLSGHELQ PVQHKFEKVN HQSNVSHISS  660
TLPPLSARDS YSAQASGTND QSHLLSSSFA IHDGLTAVRS GGVGSGTDAI TIASLRYNDM  720
NLLPENPIAT SSCLGESGTF NSLDDVCGVN PSQGGTFVKV YKSGSPGRSL DITRFSSYYE  780
LRSELERLFG LEGQLEDPVR SGWQLVFVDR ENDILLVGDD PWQEFVNSVW CIKILSPQDV  840
QQMVRGGGDL LSTTGVRTLQ GSVCDDYSAG HDMQNLTGSI APVVPLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601435943388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.790670.0cell culture| ear| embryo| endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G073750
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G073750_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550150.0BT055015.1 Zea mays full-length cDNA clone ZM_BFb0167O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146279.10.0uncharacterized LOC100279854
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLB8A0C30.0B8A0C3_MAIZE; Auxin response factor
TrEMBLK0DCR70.0K0DCR7_MAIZE; Auxin response factor (Fragment)
STRINGGRMZM2G073750_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]