PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G073047_P01 | ||||||||
Common Name | LOC103638592, ZEAMMB73_158694, Zm.129424 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 25626.1 Da PI: 4.6831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 36 | 81 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa++ GRMZM2G073047_P01 36 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALV 81 9****998.**********843...6*********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-12 | 34 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-34 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-21 | 35 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 35 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.327 | 35 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.01E-22 | 36 | 93 | No hit | No description |
PRINTS | PR00367 | 1.1E-10 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MPDSDVPSPA SSPLGSVQKI ARGRKSRRGG GRSPAYRGVR MRAWGKWVSE IREPRKKSRI 60 WLGTFPTAEM AARAHDAAAL VVKGRGAVLN FPEMAASLPR PASAAPRDVQ AAAARAAAMD 120 VPVGAAEPLP SSSPQQVLGQ PLVVGDPDVE LLEEIVELPL IDEDVMASDD VFCWTASFHD 180 CAADDPLSYE PNAWMQAGGS IAAQVAEMMV PGTGLATDQL WTAQPDGIMP SELGAFLWNP 240 CS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-17 | 30 | 93 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G073047 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G073047_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974575 | 0.0 | EU974575.1 Zea mays clone 453357 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659689.1 | 1e-173 | ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A3L6DHA6 | 1e-172 | A0A3L6DHA6_MAIZE; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | K7V9X4 | 1e-172 | K7V9X4_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G073047_P01 | 1e-173 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 2e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G073047_P01 |
Entrez Gene | 103638592 |