PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G071977_P01
Common NameLOC100381732
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 291aa    MW: 30487 Da    PI: 8.3406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G071977_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13120164347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +W++eE+ +++ + ++lG+g+W+ I+r    +Rt+ q+ s+ qk+
  GRMZM2G071977_P01 120 PWSEEEHRQFLSGLEKLGKGDWRGISRSYVPTRTPTQVASHAQKF 164
                        8**************************9998************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.637113169IPR017930Myb domain
SuperFamilySSF466894.41E-17114170IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-17116168IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.3E-11117160IPR009057Homeodomain-like
SMARTSM007172.9E-10117167IPR001005SANT/Myb domain
CDDcd001676.53E-11120165No hitNo description
PfamPF002494.3E-11120163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MARKCSHCGN CGHNSRTCGR ETMLCEAGDN GGHGGLRLFG VQVRIGGGGA GSASMKKSYS  60
MDCLQLAAPG CSLVSPSTSS SSSSLLLMSI EEGSERGAPN GYLSDGPHGR AVQERKKGVP  120
WSEEEHRQFL SGLEKLGKGD WRGISRSYVP TRTPTQVASH AQKFFLRQSS LGKKKRRSSL  180
FDMVPICENS ASISDPLSSE GASTSLSLNV PRHGVTSVSE RAALDLNSTE EDDSRADASS  240
ASASGAGTRP PFPAAQTEPL QPSSLGRGRG HHCSPLDLEL AMSLPAPSIG T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172176KKKRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G071977
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G071977_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4699120.0JX469912.1 Zea mays subsp. mays clone UT3161 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168009.20.0uncharacterized protein LOC100381732
SwissprotQ7XC576e-46MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1D6NLI60.0A0A1D6NLI6_MAIZE; MYB-related transcription factor
TrEMBLK4JBP70.0K4JBP7_MAIZE; MYB-related transcription factor (Fragment)
STRINGGRMZM2G071977_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-38MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]