PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G071468_P02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 112aa MW: 13387.5 Da PI: 10.3018 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.8e-09 | 6 | 48 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+W++ + e ++++ +q+G++ ++ I + ++ +t+ q++ ++ GRMZM2G071468_P02 6 RGKWSKSDTEFFYEGLRQFGSD-FAMIQQLFP-DKTRHQVRQKFK 48 89********************.*********.********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 6.2E-25 | 2 | 80 | No hit | No description |
SMART | SM00717 | 4.3E-8 | 5 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 6 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.49E-11 | 7 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.33E-6 | 8 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MNKPARGKWS KSDTEFFYEG LRQFGSDFAM IQQLFPDKTR HQVRQKFKSE ERKNPLLVHD 60 AIVHRSGDSL YFKKVIKQLN IEDVVLPDIK STQNKMVHQV KEALEMRMYW MI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.38863 | 1e-104 | cell culture| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G071468 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G071468_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679459 | 1e-106 | HF679459.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB53 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646030.2 | 4e-56 | transcription factor TFIIIB component B'' homolog isoform X4 | ||||
Refseq | XP_020394222.1 | 2e-56 | transcription factor TFIIIB component B'' homolog isoform X6 | ||||
Refseq | XP_023155785.1 | 4e-56 | transcription factor TFIIIB component B'' homolog isoform X4 | ||||
Refseq | XP_023155786.1 | 4e-56 | transcription factor TFIIIB component B'' homolog isoform X4 | ||||
Refseq | XP_023155789.1 | 3e-56 | transcription factor TFIIIB component B'' homolog isoform X5 | ||||
Refseq | XP_023155791.1 | 2e-56 | transcription factor TFIIIB component B'' homolog isoform X6 | ||||
Refseq | XP_023155792.1 | 2e-56 | transcription factor TFIIIB component B'' homolog isoform X6 | ||||
TrEMBL | A0A1D6HF91 | 7e-57 | A0A1D6HF91_MAIZE; Homeodomain-like superfamily protein | ||||
STRING | Sb07g001792.1 | 8e-56 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 9e-28 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G071468_P02 |